miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 3' -55.2 NC_001806.1 + 27684 0.71 0.688572
Target:  5'- cGGGAAGgcGGGaaGCCCCGggGCaccgaCGCa -3'
miRNA:   3'- -CUCUUCuuCUC--CGGGGCuuCGca---GCG- -5'
5697 3' -55.2 NC_001806.1 + 112052 0.71 0.695667
Target:  5'- ---cGGggGAGGCCCUGGacgggacggguaucGGCG-CGCa -3'
miRNA:   3'- cucuUCuuCUCCGGGGCU--------------UCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 21529 0.71 0.698699
Target:  5'- -cGAAcGGGAGGCCCCGcuacGCGgCGCg -3'
miRNA:   3'- cuCUUcUUCUCCGGGGCuu--CGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 9782 0.7 0.738552
Target:  5'- --uGGGGAGGGGCCCCGAcGUG-CGg -3'
miRNA:   3'- cucUUCUUCUCCGGGGCUuCGCaGCg -5'
5697 3' -55.2 NC_001806.1 + 4828 0.7 0.738552
Target:  5'- cGGGgcGgcGAGGCCgCGGggucgGGCGUCGg -3'
miRNA:   3'- -CUCuuCuuCUCCGGgGCU-----UCGCAGCg -5'
5697 3' -55.2 NC_001806.1 + 84069 0.7 0.757955
Target:  5'- uGGGAGucGGGGCCCCaGcuGCG-CGCu -3'
miRNA:   3'- cUCUUCuuCUCCGGGG-CuuCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 98586 0.7 0.776908
Target:  5'- cGAGggGAu-GGGCgaCCUGggGCG-CGCg -3'
miRNA:   3'- -CUCuuCUucUCCG--GGGCuuCGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 72549 0.7 0.776908
Target:  5'- gGAGggGGuAGGGGgCCCGggGCcacaccCGCc -3'
miRNA:   3'- -CUCuuCU-UCUCCgGGGCuuCGca----GCG- -5'
5697 3' -55.2 NC_001806.1 + 16620 0.69 0.786193
Target:  5'- cGGggGAGGGauguggucguuGGCCCCGAuaaggGGaccgGUCGCg -3'
miRNA:   3'- cUCuuCUUCU-----------CCGGGGCU-----UCg---CAGCG- -5'
5697 3' -55.2 NC_001806.1 + 66217 0.69 0.786193
Target:  5'- -cGggGAAGGGGUUgggggCGGAGCGUUGUg -3'
miRNA:   3'- cuCuuCUUCUCCGGg----GCUUCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 150089 0.69 0.786193
Target:  5'- cAGggGAGGcAGGCCCaccgCGggGCGgcccCGUc -3'
miRNA:   3'- cUCuuCUUC-UCCGGG----GCuuCGCa---GCG- -5'
5697 3' -55.2 NC_001806.1 + 72840 0.69 0.792611
Target:  5'- -cGAAGAAGAugacgagacaugcgGGUCCUGGagaugGGCGUCGUc -3'
miRNA:   3'- cuCUUCUUCU--------------CCGGGGCU-----UCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 24595 0.69 0.795339
Target:  5'- -cGAGGAGGAGGCCcacucgcacgCCGccuGCG-CGCg -3'
miRNA:   3'- cuCUUCUUCUCCGG----------GGCuu-CGCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 14594 0.69 0.804336
Target:  5'- cGGGuGGGuucuGAGGCCCgGAAGuCG-CGCa -3'
miRNA:   3'- -CUCuUCUu---CUCCGGGgCUUC-GCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 2860 0.69 0.804336
Target:  5'- cGGGGAGggGGGcGCgggcguccgagCCgGggGCGUcCGCg -3'
miRNA:   3'- -CUCUUCuuCUC-CG-----------GGgCuuCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 82783 0.69 0.804336
Target:  5'- cAGGAG-GGAGGCCagCCGcuGCGUcCGCg -3'
miRNA:   3'- cUCUUCuUCUCCGG--GGCuuCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 22129 0.69 0.821849
Target:  5'- -----uGGGGGGCgCCCGAGGCGgaggaggCGCg -3'
miRNA:   3'- cucuucUUCUCCG-GGGCUUCGCa------GCG- -5'
5697 3' -55.2 NC_001806.1 + 149930 0.69 0.827818
Target:  5'- -cGGAGAGGGGGCggCCCGAGucugccuggcugcuGCGucUCGCu -3'
miRNA:   3'- cuCUUCUUCUCCG--GGGCUU--------------CGC--AGCG- -5'
5697 3' -55.2 NC_001806.1 + 147048 0.68 0.837844
Target:  5'- ----cGggGAcGGCCCCGGAagucuccGCGUgGCg -3'
miRNA:   3'- cucuuCuuCU-CCGGGGCUU-------CGCAgCG- -5'
5697 3' -55.2 NC_001806.1 + 149878 0.68 0.838667
Target:  5'- cGGAcGGAGGGuCCCUGggG-GUCGCa -3'
miRNA:   3'- cUCUuCUUCUCcGGGGCuuCgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.