miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 3' -55.2 NC_001806.1 + 65635 0.67 0.903614
Target:  5'- uGGGcGAGAGG-GGCCCCGGcggccucccccugGGUGgcugCGCu -3'
miRNA:   3'- -CUC-UUCUUCuCCGGGGCU-------------UCGCa---GCG- -5'
5697 3' -55.2 NC_001806.1 + 38198 0.67 0.900434
Target:  5'- -uGAGGAucguuGGGGCCCugccgcuccgucggaCGAGGCGUCu- -3'
miRNA:   3'- cuCUUCUu----CUCCGGG---------------GCUUCGCAGcg -5'
5697 3' -55.2 NC_001806.1 + 151073 0.67 0.897848
Target:  5'- cGGggGucgcGGGGGUCgCGggG-GUCGCg -3'
miRNA:   3'- cUCuuCu---UCUCCGGgGCuuCgCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 2724 0.67 0.897848
Target:  5'- aGGggGucGGGGCCCuCGGcgGGCcggCGCg -3'
miRNA:   3'- cUCuuCuuCUCCGGG-GCU--UCGca-GCG- -5'
5697 3' -55.2 NC_001806.1 + 41829 0.67 0.897848
Target:  5'- cGGggGcGGgcgucaGGGCCCCGGGcGCGUaCGUg -3'
miRNA:   3'- cUCuuCuUC------UCCGGGGCUU-CGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 95261 0.67 0.89122
Target:  5'- -cGAcGAGGAGGCgCU---GCGUCGCg -3'
miRNA:   3'- cuCUuCUUCUCCGgGGcuuCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 96428 0.67 0.89122
Target:  5'- gGGGuuGAcgcuGGGGGUCCUGGuGGCGUCGg -3'
miRNA:   3'- -CUCuuCU----UCUCCGGGGCU-UCGCAGCg -5'
5697 3' -55.2 NC_001806.1 + 4304 0.67 0.884362
Target:  5'- ----uGAAGcGGCCCgu-GGCGUCGCg -3'
miRNA:   3'- cucuuCUUCuCCGGGgcuUCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 30875 0.67 0.877279
Target:  5'- -cGAGGAAGuGuGCCCgGAAGaCG-CGCc -3'
miRNA:   3'- cuCUUCUUCuC-CGGGgCUUC-GCaGCG- -5'
5697 3' -55.2 NC_001806.1 + 11834 0.67 0.876559
Target:  5'- cGAGggGGuGGAGGCCUgguuaGggGCGgguugguauacgcUCGCc -3'
miRNA:   3'- -CUCuuCU-UCUCCGGGg----CuuCGC-------------AGCG- -5'
5697 3' -55.2 NC_001806.1 + 117685 0.68 0.869975
Target:  5'- aGAGAAGcucGGGgCCCGAGcccGCGUCGg -3'
miRNA:   3'- -CUCUUCuucUCCgGGGCUU---CGCAGCg -5'
5697 3' -55.2 NC_001806.1 + 6569 0.68 0.869975
Target:  5'- cGGAGGAGGGGGCUCacccGCGUuCGUg -3'
miRNA:   3'- cUCUUCUUCUCCGGGgcuuCGCA-GCG- -5'
5697 3' -55.2 NC_001806.1 + 10397 0.68 0.869975
Target:  5'- cGGGggGAggcgggagccgGGGGGUCCCGcuGGCGggagUGCc -3'
miRNA:   3'- -CUCuuCU-----------UCUCCGGGGCu-UCGCa---GCG- -5'
5697 3' -55.2 NC_001806.1 + 93409 0.68 0.862457
Target:  5'- cGAGGAGAugauGGAGcugaccgcgcguGCCCUGGAGCG-CGg -3'
miRNA:   3'- -CUCUUCU----UCUC------------CGGGGCUUCGCaGCg -5'
5697 3' -55.2 NC_001806.1 + 83034 0.68 0.846796
Target:  5'- -------cGGGGUCCUGGcgAGCGUCGCg -3'
miRNA:   3'- cucuucuuCUCCGGGGCU--UCGCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 149878 0.68 0.838667
Target:  5'- cGGAcGGAGGGuCCCUGggG-GUCGCa -3'
miRNA:   3'- cUCUuCUUCUCcGGGGCuuCgCAGCG- -5'
5697 3' -55.2 NC_001806.1 + 147048 0.68 0.837844
Target:  5'- ----cGggGAcGGCCCCGGAagucuccGCGUgGCg -3'
miRNA:   3'- cucuuCuuCU-CCGGGGCUU-------CGCAgCG- -5'
5697 3' -55.2 NC_001806.1 + 149930 0.69 0.827818
Target:  5'- -cGGAGAGGGGGCggCCCGAGucugccuggcugcuGCGucUCGCu -3'
miRNA:   3'- cuCUUCUUCUCCG--GGGCUU--------------CGC--AGCG- -5'
5697 3' -55.2 NC_001806.1 + 22129 0.69 0.821849
Target:  5'- -----uGGGGGGCgCCCGAGGCGgaggaggCGCg -3'
miRNA:   3'- cucuucUUCUCCG-GGGCUUCGCa------GCG- -5'
5697 3' -55.2 NC_001806.1 + 2860 0.69 0.804336
Target:  5'- cGGGGAGggGGGcGCgggcguccgagCCgGggGCGUcCGCg -3'
miRNA:   3'- -CUCUUCuuCUC-CG-----------GGgCuuCGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.