Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5697 | 3' | -55.2 | NC_001806.1 | + | 2860 | 0.69 | 0.804336 |
Target: 5'- cGGGGAGggGGGcGCgggcguccgagCCgGggGCGUcCGCg -3' miRNA: 3'- -CUCUUCuuCUC-CG-----------GGgCuuCGCA-GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 82783 | 0.69 | 0.804336 |
Target: 5'- cAGGAG-GGAGGCCagCCGcuGCGUcCGCg -3' miRNA: 3'- cUCUUCuUCUCCGG--GGCuuCGCA-GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 24595 | 0.69 | 0.795339 |
Target: 5'- -cGAGGAGGAGGCCcacucgcacgCCGccuGCG-CGCg -3' miRNA: 3'- cuCUUCUUCUCCGG----------GGCuu-CGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 72840 | 0.69 | 0.792611 |
Target: 5'- -cGAAGAAGAugacgagacaugcgGGUCCUGGagaugGGCGUCGUc -3' miRNA: 3'- cuCUUCUUCU--------------CCGGGGCU-----UCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 150089 | 0.69 | 0.786193 |
Target: 5'- cAGggGAGGcAGGCCCaccgCGggGCGgcccCGUc -3' miRNA: 3'- cUCuuCUUC-UCCGGG----GCuuCGCa---GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 16620 | 0.69 | 0.786193 |
Target: 5'- cGGggGAGGGauguggucguuGGCCCCGAuaaggGGaccgGUCGCg -3' miRNA: 3'- cUCuuCUUCU-----------CCGGGGCU-----UCg---CAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 66217 | 0.69 | 0.786193 |
Target: 5'- -cGggGAAGGGGUUgggggCGGAGCGUUGUg -3' miRNA: 3'- cuCuuCUUCUCCGGg----GCUUCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 98586 | 0.7 | 0.776908 |
Target: 5'- cGAGggGAu-GGGCgaCCUGggGCG-CGCg -3' miRNA: 3'- -CUCuuCUucUCCG--GGGCuuCGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 72549 | 0.7 | 0.776908 |
Target: 5'- gGAGggGGuAGGGGgCCCGggGCcacaccCGCc -3' miRNA: 3'- -CUCuuCU-UCUCCgGGGCuuCGca----GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 84069 | 0.7 | 0.757955 |
Target: 5'- uGGGAGucGGGGCCCCaGcuGCG-CGCu -3' miRNA: 3'- cUCUUCuuCUCCGGGG-CuuCGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 9782 | 0.7 | 0.738552 |
Target: 5'- --uGGGGAGGGGCCCCGAcGUG-CGg -3' miRNA: 3'- cucUUCUUCUCCGGGGCUuCGCaGCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 4828 | 0.7 | 0.738552 |
Target: 5'- cGGGgcGgcGAGGCCgCGGggucgGGCGUCGg -3' miRNA: 3'- -CUCuuCuuCUCCGGgGCU-----UCGCAGCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 21529 | 0.71 | 0.698699 |
Target: 5'- -cGAAcGGGAGGCCCCGcuacGCGgCGCg -3' miRNA: 3'- cuCUUcUUCUCCGGGGCuu--CGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 112052 | 0.71 | 0.695667 |
Target: 5'- ---cGGggGAGGCCCUGGacgggacggguaucGGCG-CGCa -3' miRNA: 3'- cucuUCuuCUCCGGGGCU--------------UCGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 27684 | 0.71 | 0.688572 |
Target: 5'- cGGGAAGgcGGGaaGCCCCGggGCaccgaCGCa -3' miRNA: 3'- -CUCUUCuuCUC--CGGGGCuuCGca---GCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 130457 | 0.71 | 0.687557 |
Target: 5'- cGGGAGcuGcggugccGGGaUCCCGAGGCGUCGCu -3' miRNA: 3'- cUCUUCuuC-------UCC-GGGGCUUCGCAGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 130050 | 0.72 | 0.672274 |
Target: 5'- aGGggGAgcuacugauuuacauGGAcGGCUCCGggGCG-CGCu -3' miRNA: 3'- cUCuuCU---------------UCU-CCGGGGCuuCGCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 77950 | 0.72 | 0.668185 |
Target: 5'- uGGGggGGugacgcGGcGGCCCCGggGcCGcCGCu -3' miRNA: 3'- -CUCuuCU------UCuCCGGGGCuuC-GCaGCG- -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 56938 | 0.72 | 0.647679 |
Target: 5'- -cGAcGAacAGGGGCCCCGggGCGagGa -3' miRNA: 3'- cuCUuCU--UCUCCGGGGCuuCGCagCg -5' |
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5697 | 3' | -55.2 | NC_001806.1 | + | 38578 | 0.72 | 0.627124 |
Target: 5'- --cGGGGAGAGGCaCCGAAGCGUgacCGUg -3' miRNA: 3'- cucUUCUUCUCCGgGGCUUCGCA---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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