Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5697 | 5' | -64.8 | NC_001806.1 | + | 127045 | 0.7 | 0.326115 |
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Target: 5'- uGGGCCUCucguUCUCCGGGGcCCggcCCUGc -3' miRNA: 3'- -CCCGGGGc---AGGGGCCCCaGGaa-GGAC- -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 3365 | 0.7 | 0.319254 |
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Target: 5'- cGGGCCCCGgccagCCCCGGGacggCCg-CCa- -3' miRNA: 3'- -CCCGGGGCa----GGGGCCCca--GGaaGGac -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 30725 | 0.7 | 0.305859 |
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Target: 5'- cGGCCCCGaCCCCcgcGGGGgccgCCUcuUCCg- -3' miRNA: 3'- cCCGGGGCaGGGG---CCCCa---GGA--AGGac -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 11118 | 0.71 | 0.299324 |
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Target: 5'- cGGGCCCUcUCCCCGGcuUCCUgaacUCCUc -3' miRNA: 3'- -CCCGGGGcAGGGGCCccAGGA----AGGAc -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 22068 | 0.71 | 0.274269 |
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Target: 5'- cGGGcCCCCGcCCCCGGGGcgggugCUguacggcggCCUGg -3' miRNA: 3'- -CCC-GGGGCaGGGGCCCCa-----GGaa-------GGAC- -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 32968 | 0.72 | 0.262384 |
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Target: 5'- gGGGCCCCuuggGUCCgCCGGGGcCCcgggCCg- -3' miRNA: 3'- -CCCGGGG----CAGG-GGCCCCaGGaa--GGac -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 12893 | 0.77 | 0.109788 |
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Target: 5'- cGGcGCCaCCGUCCCCacGGGGUCCU-CCa- -3' miRNA: 3'- -CC-CGG-GGCAGGGG--CCCCAGGAaGGac -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 150114 | 0.81 | 0.058906 |
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Target: 5'- cGGCCCCGUCCCCGGGGaCCaacCCg- -3' miRNA: 3'- cCCGGGGCAGGGGCCCCaGGaa-GGac -5' |
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| 5697 | 5' | -64.8 | NC_001806.1 | + | 56263 | 1.09 | 0.000578 |
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Target: 5'- cGGGCCCCGUCCCCGGGGUCCUUCCUGu -3' miRNA: 3'- -CCCGGGGCAGGGGCCCCAGGAAGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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