miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 4363 0.67 0.458856
Target:  5'- cGGCCCgCGgaggCCgCgGGGGUCCUcgCCg- -3'
miRNA:   3'- cCCGGG-GCa---GG-GgCCCCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 143605 0.68 0.45026
Target:  5'- cGGucCCCCGuUCCCCGGGGgCCguuaucUCCa- -3'
miRNA:   3'- cCC--GGGGC-AGGGGCCCCaGGa-----AGGac -5'
5697 5' -64.8 NC_001806.1 + 21664 0.68 0.441753
Target:  5'- cGGGUCCuCGUCCUCGucGUCCgcaUCCUc -3'
miRNA:   3'- -CCCGGG-GCAGGGGCccCAGGa--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 137679 0.68 0.433339
Target:  5'- uGGCCCCGgccaCCCaCGGGGcgcugCCggCCUu -3'
miRNA:   3'- cCCGGGGCa---GGG-GCCCCa----GGaaGGAc -5'
5697 5' -64.8 NC_001806.1 + 56529 0.68 0.432502
Target:  5'- cGGGCCCgGcguUCCCCGGGcauGUUCUcgcaccgUCUUGa -3'
miRNA:   3'- -CCCGGGgC---AGGGGCCC---CAGGA-------AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 2314 0.68 0.425018
Target:  5'- aGGCCCCG-CCgCCGGccaGGUCCUcgCCc- -3'
miRNA:   3'- cCCGGGGCaGG-GGCC---CCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 59992 0.68 0.425018
Target:  5'- uGGCCUCGgggaCCCGGGGgacggCCgggUCCg- -3'
miRNA:   3'- cCCGGGGCag--GGGCCCCa----GGa--AGGac -5'
5697 5' -64.8 NC_001806.1 + 106706 0.68 0.425018
Target:  5'- cGGGcCCCCGggcggcCCCCGguaucGGGUCUUugUCCUa -3'
miRNA:   3'- -CCC-GGGGCa-----GGGGC-----CCCAGGA--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 120867 0.68 0.425018
Target:  5'- cGGCCCCuggcgccgccugGUcCCCCGGGGaCCUUgCCc- -3'
miRNA:   3'- cCCGGGG------------CA-GGGGCCCCaGGAA-GGac -5'
5697 5' -64.8 NC_001806.1 + 30279 0.68 0.416793
Target:  5'- -cGCCCCGgcCCCCGGGGcggagCCggCCg- -3'
miRNA:   3'- ccCGGGGCa-GGGGCCCCa----GGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 30236 0.68 0.411905
Target:  5'- uGGCCCCGUgcgugcgagcgccgcCUCCGGGGcCCggCCc- -3'
miRNA:   3'- cCCGGGGCA---------------GGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 67499 0.69 0.392712
Target:  5'- gGGGUCCCGaccCCCUGGGGagcCCUgggCCg- -3'
miRNA:   3'- -CCCGGGGCa--GGGGCCCCa--GGAa--GGac -5'
5697 5' -64.8 NC_001806.1 + 20296 0.69 0.384889
Target:  5'- cGGCCCCGcCCCCuuggGGcGGUCCcgCCc- -3'
miRNA:   3'- cCCGGGGCaGGGG----CC-CCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 56696 0.69 0.377169
Target:  5'- gGGGCCCgGgaaCCCCGggucgcucuGGGUCCU-CCg- -3'
miRNA:   3'- -CCCGGGgCa--GGGGC---------CCCAGGAaGGac -5'
5697 5' -64.8 NC_001806.1 + 65644 0.69 0.372588
Target:  5'- gGGGCCCCGgcggccUCCCCcuggguggcugcgcuGGGGccgCCggccUCCUGu -3'
miRNA:   3'- -CCCGGGGC------AGGGG---------------CCCCa--GGa---AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 142224 0.69 0.368799
Target:  5'- aGGCCCgcuucauCGUCCggcggcagaaCCGGGGUCCgUCCa- -3'
miRNA:   3'- cCCGGG-------GCAGG----------GGCCCCAGGaAGGac -5'
5697 5' -64.8 NC_001806.1 + 21509 0.7 0.340163
Target:  5'- cGGGCCCCGg-CCCGGGG-CCg----- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 16944 0.7 0.340163
Target:  5'- cGGCUuuGUCUCCGGcGGgacggcuccUCCUUCCUc -3'
miRNA:   3'- cCCGGggCAGGGGCC-CC---------AGGAAGGAc -5'
5697 5' -64.8 NC_001806.1 + 78927 0.7 0.340163
Target:  5'- cGGCCCC-UCgCCCGGGGcCCgccgugUCUGg -3'
miRNA:   3'- cCCGGGGcAG-GGGCCCCaGGaa----GGAC- -5'
5697 5' -64.8 NC_001806.1 + 145000 0.7 0.326115
Target:  5'- gGGGCCCCGg-CCCGGGG-CC--CCa- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.