miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 30725 0.7 0.305859
Target:  5'- cGGCCCCGaCCCCcgcGGGGgccgCCUcuUCCg- -3'
miRNA:   3'- cCCGGGGCaGGGG---CCCCa---GGA--AGGac -5'
5697 5' -64.8 NC_001806.1 + 31104 0.66 0.53974
Target:  5'- cGGGCCgCgGUCCCCGGcuGGagccgCCgcacCCUGc -3'
miRNA:   3'- -CCCGG-GgCAGGGGCC--CCa----GGaa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 32968 0.72 0.262384
Target:  5'- gGGGCCCCuuggGUCCgCCGGGGcCCcgggCCg- -3'
miRNA:   3'- -CCCGGGG----CAGG-GGCCCCaGGaa--GGac -5'
5697 5' -64.8 NC_001806.1 + 46077 0.67 0.494077
Target:  5'- cGGcGUCCCGUUUCCGGGGcgguuuugUCCggcccggggCCUGc -3'
miRNA:   3'- -CC-CGGGGCAGGGGCCCC--------AGGaa-------GGAC- -5'
5697 5' -64.8 NC_001806.1 + 48964 0.66 0.566876
Target:  5'- cGGCCCCGUCgcucccguccauuCCCaucgcgagGGGGUCCggcggcaCCUa -3'
miRNA:   3'- cCCGGGGCAG-------------GGG--------CCCCAGGaa-----GGAc -5'
5697 5' -64.8 NC_001806.1 + 56263 1.09 0.000578
Target:  5'- cGGGCCCCGUCCCCGGGGUCCUUCCUGu -3'
miRNA:   3'- -CCCGGGGCAGGGGCCCCAGGAAGGAC- -5'
5697 5' -64.8 NC_001806.1 + 56529 0.68 0.432502
Target:  5'- cGGGCCCgGcguUCCCCGGGcauGUUCUcgcaccgUCUUGa -3'
miRNA:   3'- -CCCGGGgC---AGGGGCCC---CAGGA-------AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 56696 0.69 0.377169
Target:  5'- gGGGCCCgGgaaCCCCGggucgcucuGGGUCCU-CCg- -3'
miRNA:   3'- -CCCGGGgCa--GGGGC---------CCCAGGAaGGac -5'
5697 5' -64.8 NC_001806.1 + 59992 0.68 0.425018
Target:  5'- uGGCCUCGgggaCCCGGGGgacggCCgggUCCg- -3'
miRNA:   3'- cCCGGGGCag--GGGCCCCa----GGa--AGGac -5'
5697 5' -64.8 NC_001806.1 + 65644 0.69 0.372588
Target:  5'- gGGGCCCCGgcggccUCCCCcuggguggcugcgcuGGGGccgCCggccUCCUGu -3'
miRNA:   3'- -CCCGGGGC------AGGGG---------------CCCCa--GGa---AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 67499 0.69 0.392712
Target:  5'- gGGGUCCCGaccCCCUGGGGagcCCUgggCCg- -3'
miRNA:   3'- -CCCGGGGCa--GGGGCCCCa--GGAa--GGac -5'
5697 5' -64.8 NC_001806.1 + 69960 0.66 0.521282
Target:  5'- cGGGCUUCGUCCCCuacGUUCUggcCCUGg -3'
miRNA:   3'- -CCCGGGGCAGGGGcccCAGGAa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 72628 0.67 0.467538
Target:  5'- aGGGCCuCCGagacaUCCCGGGGgacggCCggUCCg- -3'
miRNA:   3'- -CCCGG-GGCa----GGGGCCCCa----GGa-AGGac -5'
5697 5' -64.8 NC_001806.1 + 78927 0.7 0.340163
Target:  5'- cGGCCCC-UCgCCCGGGGcCCgccgugUCUGg -3'
miRNA:   3'- cCCGGGGcAG-GGGCCCCaGGaa----GGAC- -5'
5697 5' -64.8 NC_001806.1 + 105744 0.67 0.503076
Target:  5'- cGGGCCCCGUgggUUagggaCGGGGUCCc-CCa- -3'
miRNA:   3'- -CCCGGGGCA---GGg----GCCCCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 106668 0.66 0.556537
Target:  5'- gGGGaCCCCGcggacgaaaaccCCCCGGGGgcUCUUCCn- -3'
miRNA:   3'- -CCC-GGGGCa-----------GGGGCCCCa-GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 106706 0.68 0.425018
Target:  5'- cGGGcCCCCGggcggcCCCCGguaucGGGUCUUugUCCUa -3'
miRNA:   3'- -CCC-GGGGCa-----GGGGC-----CCCAGGA--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 120867 0.68 0.425018
Target:  5'- cGGCCCCuggcgccgccugGUcCCCCGGGGaCCUUgCCc- -3'
miRNA:   3'- cCCGGGG------------CA-GGGGCCCCaGGAA-GGac -5'
5697 5' -64.8 NC_001806.1 + 125939 0.66 0.567819
Target:  5'- uGGGCCCUG-CUCCGGcGGggCCUcacgaccgcaUCCa- -3'
miRNA:   3'- -CCCGGGGCaGGGGCC-CCa-GGA----------AGGac -5'
5697 5' -64.8 NC_001806.1 + 127045 0.7 0.326115
Target:  5'- uGGGCCUCucguUCUCCGGGGcCCggcCCUGc -3'
miRNA:   3'- -CCCGGGGc---AGGGGCCCCaGGaa-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.