miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 2314 0.68 0.425018
Target:  5'- aGGCCCCG-CCgCCGGccaGGUCCUcgCCc- -3'
miRNA:   3'- cCCGGGGCaGG-GGCC---CCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 2927 0.66 0.567819
Target:  5'- cGGGCCgCCGcCUCCGGGcGgCCgggCCg- -3'
miRNA:   3'- -CCCGG-GGCaGGGGCCC-CaGGaa-GGac -5'
5697 5' -64.8 NC_001806.1 + 3365 0.7 0.319254
Target:  5'- cGGGCCCCGgccagCCCCGGGacggCCg-CCa- -3'
miRNA:   3'- -CCCGGGGCa----GGGGCCCca--GGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 3936 0.67 0.467538
Target:  5'- aGGCCUgguccagcgccaCGUCCCCGGGGaCCacgcgcgggUUCUGg -3'
miRNA:   3'- cCCGGG------------GCAGGGGCCCCaGGa--------AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 4363 0.67 0.458856
Target:  5'- cGGCCCgCGgaggCCgCgGGGGUCCUcgCCg- -3'
miRNA:   3'- cCCGGG-GCa---GG-GgCCCCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 7400 0.66 0.567819
Target:  5'- gGGaGCCCCGgucUCCCCGGGaGcCCcggUCUc- -3'
miRNA:   3'- -CC-CGGGGC---AGGGGCCC-CaGGa--AGGac -5'
5697 5' -64.8 NC_001806.1 + 11118 0.71 0.299324
Target:  5'- cGGGCCCUcUCCCCGGcuUCCUgaacUCCUc -3'
miRNA:   3'- -CCCGGGGcAGGGGCCccAGGA----AGGAc -5'
5697 5' -64.8 NC_001806.1 + 12336 0.67 0.485152
Target:  5'- cGGGCCCCaaggCCCCGGcGUCCa----- -3'
miRNA:   3'- -CCCGGGGca--GGGGCCcCAGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 12893 0.77 0.109788
Target:  5'- cGGcGCCaCCGUCCCCacGGGGUCCU-CCa- -3'
miRNA:   3'- -CC-CGG-GGCAGGGG--CCCCAGGAaGGac -5'
5697 5' -64.8 NC_001806.1 + 12924 0.67 0.476305
Target:  5'- aGGGCCgaaUCCUCGGGGU-CUUCCg- -3'
miRNA:   3'- -CCCGGggcAGGGGCCCCAgGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 16944 0.7 0.340163
Target:  5'- cGGCUuuGUCUCCGGcGGgacggcuccUCCUUCCUc -3'
miRNA:   3'- cCCGGggCAGGGGCC-CC---------AGGAAGGAc -5'
5697 5' -64.8 NC_001806.1 + 20174 0.66 0.512146
Target:  5'- cGGG-CCCGcCCCCGGGG-CCggCg-- -3'
miRNA:   3'- -CCCgGGGCaGGGGCCCCaGGaaGgac -5'
5697 5' -64.8 NC_001806.1 + 20296 0.69 0.384889
Target:  5'- cGGCCCCGcCCCCuuggGGcGGUCCcgCCc- -3'
miRNA:   3'- cCCGGGGCaGGGG----CC-CCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 21509 0.7 0.340163
Target:  5'- cGGGCCCCGg-CCCGGGG-CCg----- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 21664 0.68 0.441753
Target:  5'- cGGGUCCuCGUCCUCGucGUCCgcaUCCUc -3'
miRNA:   3'- -CCCGGG-GCAGGGGCccCAGGa--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 22068 0.71 0.274269
Target:  5'- cGGGcCCCCGcCCCCGGGGcgggugCUguacggcggCCUGg -3'
miRNA:   3'- -CCC-GGGGCaGGGGCCCCa-----GGaa-------GGAC- -5'
5697 5' -64.8 NC_001806.1 + 23109 0.66 0.53974
Target:  5'- gGGGCCCUGggCCCCGcgcugccgcGGGaCCcgcgCCUGc -3'
miRNA:   3'- -CCCGGGGCa-GGGGC---------CCCaGGaa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 23527 0.66 0.5556
Target:  5'- aGGGCCCCGacccccugggcggcUggcggcggcagcCCCCGGGGcCCagCCa- -3'
miRNA:   3'- -CCCGGGGC--------------A------------GGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 30236 0.68 0.411905
Target:  5'- uGGCCCCGUgcgugcgagcgccgcCUCCGGGGcCCggCCc- -3'
miRNA:   3'- cCCGGGGCA---------------GGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 30279 0.68 0.416793
Target:  5'- -cGCCCCGgcCCCCGGGGcggagCCggCCg- -3'
miRNA:   3'- ccCGGGGCa-GGGGCCCCa----GGaaGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.