miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 150255 0.67 0.476305
Target:  5'- uGGCCUgcguCGgugCCCCGGGGcuucccgCCUUCCc- -3'
miRNA:   3'- cCCGGG----GCa--GGGGCCCCa------GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 150114 0.81 0.058906
Target:  5'- cGGCCCCGUCCCCGGGGaCCaacCCg- -3'
miRNA:   3'- cCCGGGGCAGGGGCCCCaGGaa-GGac -5'
5697 5' -64.8 NC_001806.1 + 147673 0.67 0.485152
Target:  5'- cGGCUCCG-CCCCGGGGgCCg----- -3'
miRNA:   3'- cCCGGGGCaGGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 145000 0.7 0.326115
Target:  5'- gGGGCCCCGg-CCCGGGG-CC--CCa- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 144822 0.67 0.476305
Target:  5'- gGGGcCCCCGaCCgCGGcGGUCCgggccccgUCCg- -3'
miRNA:   3'- -CCC-GGGGCaGGgGCC-CCAGGa-------AGGac -5'
5697 5' -64.8 NC_001806.1 + 143605 0.68 0.45026
Target:  5'- cGGucCCCCGuUCCCCGGGGgCCguuaucUCCa- -3'
miRNA:   3'- cCC--GGGGC-AGGGGCCCCaGGa-----AGGac -5'
5697 5' -64.8 NC_001806.1 + 142224 0.69 0.368799
Target:  5'- aGGCCCgcuucauCGUCCggcggcagaaCCGGGGUCCgUCCa- -3'
miRNA:   3'- cCCGGG-------GCAGG----------GGCCCCAGGaAGGac -5'
5697 5' -64.8 NC_001806.1 + 137679 0.68 0.433339
Target:  5'- uGGCCCCGgccaCCCaCGGGGcgcugCCggCCUu -3'
miRNA:   3'- cCCGGGGCa---GGG-GCCCCa----GGaaGGAc -5'
5697 5' -64.8 NC_001806.1 + 132512 0.66 0.512146
Target:  5'- gGGGCCCUGgcCCCCGucuuugCCUUUCUGg -3'
miRNA:   3'- -CCCGGGGCa-GGGGCccca--GGAAGGAC- -5'
5697 5' -64.8 NC_001806.1 + 127045 0.7 0.326115
Target:  5'- uGGGCCUCucguUCUCCGGGGcCCggcCCUGc -3'
miRNA:   3'- -CCCGGGGc---AGGGGCCCCaGGaa-GGAC- -5'
5697 5' -64.8 NC_001806.1 + 125939 0.66 0.567819
Target:  5'- uGGGCCCUG-CUCCGGcGGggCCUcacgaccgcaUCCa- -3'
miRNA:   3'- -CCCGGGGCaGGGGCC-CCa-GGA----------AGGac -5'
5697 5' -64.8 NC_001806.1 + 120867 0.68 0.425018
Target:  5'- cGGCCCCuggcgccgccugGUcCCCCGGGGaCCUUgCCc- -3'
miRNA:   3'- cCCGGGG------------CA-GGGGCCCCaGGAA-GGac -5'
5697 5' -64.8 NC_001806.1 + 106706 0.68 0.425018
Target:  5'- cGGGcCCCCGggcggcCCCCGguaucGGGUCUUugUCCUa -3'
miRNA:   3'- -CCC-GGGGCa-----GGGGC-----CCCAGGA--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 106668 0.66 0.556537
Target:  5'- gGGGaCCCCGcggacgaaaaccCCCCGGGGgcUCUUCCn- -3'
miRNA:   3'- -CCC-GGGGCa-----------GGGGCCCCa-GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 105744 0.67 0.503076
Target:  5'- cGGGCCCCGUgggUUagggaCGGGGUCCc-CCa- -3'
miRNA:   3'- -CCCGGGGCA---GGg----GCCCCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 78927 0.7 0.340163
Target:  5'- cGGCCCC-UCgCCCGGGGcCCgccgugUCUGg -3'
miRNA:   3'- cCCGGGGcAG-GGGCCCCaGGaa----GGAC- -5'
5697 5' -64.8 NC_001806.1 + 72628 0.67 0.467538
Target:  5'- aGGGCCuCCGagacaUCCCGGGGgacggCCggUCCg- -3'
miRNA:   3'- -CCCGG-GGCa----GGGGCCCCa----GGa-AGGac -5'
5697 5' -64.8 NC_001806.1 + 69960 0.66 0.521282
Target:  5'- cGGGCUUCGUCCCCuacGUUCUggcCCUGg -3'
miRNA:   3'- -CCCGGGGCAGGGGcccCAGGAa--GGAC- -5'
5697 5' -64.8 NC_001806.1 + 67499 0.69 0.392712
Target:  5'- gGGGUCCCGaccCCCUGGGGagcCCUgggCCg- -3'
miRNA:   3'- -CCCGGGGCa--GGGGCCCCa--GGAa--GGac -5'
5697 5' -64.8 NC_001806.1 + 65644 0.69 0.372588
Target:  5'- gGGGCCCCGgcggccUCCCCcuggguggcugcgcuGGGGccgCCggccUCCUGu -3'
miRNA:   3'- -CCCGGGGC------AGGGG---------------CCCCa--GGa---AGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.