miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 2927 0.66 0.567819
Target:  5'- cGGGCCgCCGcCUCCGGGcGgCCgggCCg- -3'
miRNA:   3'- -CCCGG-GGCaGGGGCCC-CaGGaa-GGac -5'
5697 5' -64.8 NC_001806.1 + 78927 0.7 0.340163
Target:  5'- cGGCCCC-UCgCCCGGGGcCCgccgugUCUGg -3'
miRNA:   3'- cCCGGGGcAG-GGGCCCCaGGaa----GGAC- -5'
5697 5' -64.8 NC_001806.1 + 142224 0.69 0.368799
Target:  5'- aGGCCCgcuucauCGUCCggcggcagaaCCGGGGUCCgUCCa- -3'
miRNA:   3'- cCCGGG-------GCAGG----------GGCCCCAGGaAGGac -5'
5697 5' -64.8 NC_001806.1 + 65644 0.69 0.372588
Target:  5'- gGGGCCCCGgcggccUCCCCcuggguggcugcgcuGGGGccgCCggccUCCUGu -3'
miRNA:   3'- -CCCGGGGC------AGGGG---------------CCCCa--GGa---AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 56696 0.69 0.377169
Target:  5'- gGGGCCCgGgaaCCCCGggucgcucuGGGUCCU-CCg- -3'
miRNA:   3'- -CCCGGGgCa--GGGGC---------CCCAGGAaGGac -5'
5697 5' -64.8 NC_001806.1 + 20296 0.69 0.384889
Target:  5'- cGGCCCCGcCCCCuuggGGcGGUCCcgCCc- -3'
miRNA:   3'- cCCGGGGCaGGGG----CC-CCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 67499 0.69 0.392712
Target:  5'- gGGGUCCCGaccCCCUGGGGagcCCUgggCCg- -3'
miRNA:   3'- -CCCGGGGCa--GGGGCCCCa--GGAa--GGac -5'
5697 5' -64.8 NC_001806.1 + 30236 0.68 0.411905
Target:  5'- uGGCCCCGUgcgugcgagcgccgcCUCCGGGGcCCggCCc- -3'
miRNA:   3'- cCCGGGGCA---------------GGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 30279 0.68 0.416793
Target:  5'- -cGCCCCGgcCCCCGGGGcggagCCggCCg- -3'
miRNA:   3'- ccCGGGGCa-GGGGCCCCa----GGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 21509 0.7 0.340163
Target:  5'- cGGGCCCCGg-CCCGGGG-CCg----- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 16944 0.7 0.340163
Target:  5'- cGGCUuuGUCUCCGGcGGgacggcuccUCCUUCCUc -3'
miRNA:   3'- cCCGGggCAGGGGCC-CC---------AGGAAGGAc -5'
5697 5' -64.8 NC_001806.1 + 145000 0.7 0.326115
Target:  5'- gGGGCCCCGg-CCCGGGG-CC--CCa- -3'
miRNA:   3'- -CCCGGGGCagGGGCCCCaGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 150114 0.81 0.058906
Target:  5'- cGGCCCCGUCCCCGGGGaCCaacCCg- -3'
miRNA:   3'- cCCGGGGCAGGGGCCCCaGGaa-GGac -5'
5697 5' -64.8 NC_001806.1 + 12893 0.77 0.109788
Target:  5'- cGGcGCCaCCGUCCCCacGGGGUCCU-CCa- -3'
miRNA:   3'- -CC-CGG-GGCAGGGG--CCCCAGGAaGGac -5'
5697 5' -64.8 NC_001806.1 + 32968 0.72 0.262384
Target:  5'- gGGGCCCCuuggGUCCgCCGGGGcCCcgggCCg- -3'
miRNA:   3'- -CCCGGGG----CAGG-GGCCCCaGGaa--GGac -5'
5697 5' -64.8 NC_001806.1 + 22068 0.71 0.274269
Target:  5'- cGGGcCCCCGcCCCCGGGGcgggugCUguacggcggCCUGg -3'
miRNA:   3'- -CCC-GGGGCaGGGGCCCCa-----GGaa-------GGAC- -5'
5697 5' -64.8 NC_001806.1 + 11118 0.71 0.299324
Target:  5'- cGGGCCCUcUCCCCGGcuUCCUgaacUCCUc -3'
miRNA:   3'- -CCCGGGGcAGGGGCCccAGGA----AGGAc -5'
5697 5' -64.8 NC_001806.1 + 30725 0.7 0.305859
Target:  5'- cGGCCCCGaCCCCcgcGGGGgccgCCUcuUCCg- -3'
miRNA:   3'- cCCGGGGCaGGGG---CCCCa---GGA--AGGac -5'
5697 5' -64.8 NC_001806.1 + 3365 0.7 0.319254
Target:  5'- cGGGCCCCGgccagCCCCGGGacggCCg-CCa- -3'
miRNA:   3'- -CCCGGGGCa----GGGGCCCca--GGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 127045 0.7 0.326115
Target:  5'- uGGGCCUCucguUCUCCGGGGcCCggcCCUGc -3'
miRNA:   3'- -CCCGGGGc---AGGGGCCCCaGGaa-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.