Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5697 | 5' | -64.8 | NC_001806.1 | + | 2927 | 0.66 | 0.567819 |
Target: 5'- cGGGCCgCCGcCUCCGGGcGgCCgggCCg- -3' miRNA: 3'- -CCCGG-GGCaGGGGCCC-CaGGaa-GGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 78927 | 0.7 | 0.340163 |
Target: 5'- cGGCCCC-UCgCCCGGGGcCCgccgugUCUGg -3' miRNA: 3'- cCCGGGGcAG-GGGCCCCaGGaa----GGAC- -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 142224 | 0.69 | 0.368799 |
Target: 5'- aGGCCCgcuucauCGUCCggcggcagaaCCGGGGUCCgUCCa- -3' miRNA: 3'- cCCGGG-------GCAGG----------GGCCCCAGGaAGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 65644 | 0.69 | 0.372588 |
Target: 5'- gGGGCCCCGgcggccUCCCCcuggguggcugcgcuGGGGccgCCggccUCCUGu -3' miRNA: 3'- -CCCGGGGC------AGGGG---------------CCCCa--GGa---AGGAC- -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 56696 | 0.69 | 0.377169 |
Target: 5'- gGGGCCCgGgaaCCCCGggucgcucuGGGUCCU-CCg- -3' miRNA: 3'- -CCCGGGgCa--GGGGC---------CCCAGGAaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 20296 | 0.69 | 0.384889 |
Target: 5'- cGGCCCCGcCCCCuuggGGcGGUCCcgCCc- -3' miRNA: 3'- cCCGGGGCaGGGG----CC-CCAGGaaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 67499 | 0.69 | 0.392712 |
Target: 5'- gGGGUCCCGaccCCCUGGGGagcCCUgggCCg- -3' miRNA: 3'- -CCCGGGGCa--GGGGCCCCa--GGAa--GGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 30236 | 0.68 | 0.411905 |
Target: 5'- uGGCCCCGUgcgugcgagcgccgcCUCCGGGGcCCggCCc- -3' miRNA: 3'- cCCGGGGCA---------------GGGGCCCCaGGaaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 30279 | 0.68 | 0.416793 |
Target: 5'- -cGCCCCGgcCCCCGGGGcggagCCggCCg- -3' miRNA: 3'- ccCGGGGCa-GGGGCCCCa----GGaaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 21509 | 0.7 | 0.340163 |
Target: 5'- cGGGCCCCGg-CCCGGGG-CCg----- -3' miRNA: 3'- -CCCGGGGCagGGGCCCCaGGaaggac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 16944 | 0.7 | 0.340163 |
Target: 5'- cGGCUuuGUCUCCGGcGGgacggcuccUCCUUCCUc -3' miRNA: 3'- cCCGGggCAGGGGCC-CC---------AGGAAGGAc -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 145000 | 0.7 | 0.326115 |
Target: 5'- gGGGCCCCGg-CCCGGGG-CC--CCa- -3' miRNA: 3'- -CCCGGGGCagGGGCCCCaGGaaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 150114 | 0.81 | 0.058906 |
Target: 5'- cGGCCCCGUCCCCGGGGaCCaacCCg- -3' miRNA: 3'- cCCGGGGCAGGGGCCCCaGGaa-GGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 12893 | 0.77 | 0.109788 |
Target: 5'- cGGcGCCaCCGUCCCCacGGGGUCCU-CCa- -3' miRNA: 3'- -CC-CGG-GGCAGGGG--CCCCAGGAaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 32968 | 0.72 | 0.262384 |
Target: 5'- gGGGCCCCuuggGUCCgCCGGGGcCCcgggCCg- -3' miRNA: 3'- -CCCGGGG----CAGG-GGCCCCaGGaa--GGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 22068 | 0.71 | 0.274269 |
Target: 5'- cGGGcCCCCGcCCCCGGGGcgggugCUguacggcggCCUGg -3' miRNA: 3'- -CCC-GGGGCaGGGGCCCCa-----GGaa-------GGAC- -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 11118 | 0.71 | 0.299324 |
Target: 5'- cGGGCCCUcUCCCCGGcuUCCUgaacUCCUc -3' miRNA: 3'- -CCCGGGGcAGGGGCCccAGGA----AGGAc -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 30725 | 0.7 | 0.305859 |
Target: 5'- cGGCCCCGaCCCCcgcGGGGgccgCCUcuUCCg- -3' miRNA: 3'- cCCGGGGCaGGGG---CCCCa---GGA--AGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 3365 | 0.7 | 0.319254 |
Target: 5'- cGGGCCCCGgccagCCCCGGGacggCCg-CCa- -3' miRNA: 3'- -CCCGGGGCa----GGGGCCCca--GGaaGGac -5' |
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5697 | 5' | -64.8 | NC_001806.1 | + | 127045 | 0.7 | 0.326115 |
Target: 5'- uGGGCCUCucguUCUCCGGGGcCCggcCCUGc -3' miRNA: 3'- -CCCGGGGc---AGGGGCCCCaGGaa-GGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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