miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5697 5' -64.8 NC_001806.1 + 120867 0.68 0.425018
Target:  5'- cGGCCCCuggcgccgccugGUcCCCCGGGGaCCUUgCCc- -3'
miRNA:   3'- cCCGGGG------------CA-GGGGCCCCaGGAA-GGac -5'
5697 5' -64.8 NC_001806.1 + 106706 0.68 0.425018
Target:  5'- cGGGcCCCCGggcggcCCCCGguaucGGGUCUUugUCCUa -3'
miRNA:   3'- -CCC-GGGGCa-----GGGGC-----CCCAGGA--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 59992 0.68 0.425018
Target:  5'- uGGCCUCGgggaCCCGGGGgacggCCgggUCCg- -3'
miRNA:   3'- cCCGGGGCag--GGGCCCCa----GGa--AGGac -5'
5697 5' -64.8 NC_001806.1 + 2314 0.68 0.425018
Target:  5'- aGGCCCCG-CCgCCGGccaGGUCCUcgCCc- -3'
miRNA:   3'- cCCGGGGCaGG-GGCC---CCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 56529 0.68 0.432502
Target:  5'- cGGGCCCgGcguUCCCCGGGcauGUUCUcgcaccgUCUUGa -3'
miRNA:   3'- -CCCGGGgC---AGGGGCCC---CAGGA-------AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 137679 0.68 0.433339
Target:  5'- uGGCCCCGgccaCCCaCGGGGcgcugCCggCCUu -3'
miRNA:   3'- cCCGGGGCa---GGG-GCCCCa----GGaaGGAc -5'
5697 5' -64.8 NC_001806.1 + 21664 0.68 0.441753
Target:  5'- cGGGUCCuCGUCCUCGucGUCCgcaUCCUc -3'
miRNA:   3'- -CCCGGG-GCAGGGGCccCAGGa--AGGAc -5'
5697 5' -64.8 NC_001806.1 + 143605 0.68 0.45026
Target:  5'- cGGucCCCCGuUCCCCGGGGgCCguuaucUCCa- -3'
miRNA:   3'- cCC--GGGGC-AGGGGCCCCaGGa-----AGGac -5'
5697 5' -64.8 NC_001806.1 + 4363 0.67 0.458856
Target:  5'- cGGCCCgCGgaggCCgCgGGGGUCCUcgCCg- -3'
miRNA:   3'- cCCGGG-GCa---GG-GgCCCCAGGAa-GGac -5'
5697 5' -64.8 NC_001806.1 + 72628 0.67 0.467538
Target:  5'- aGGGCCuCCGagacaUCCCGGGGgacggCCggUCCg- -3'
miRNA:   3'- -CCCGG-GGCa----GGGGCCCCa----GGa-AGGac -5'
5697 5' -64.8 NC_001806.1 + 3936 0.67 0.467538
Target:  5'- aGGCCUgguccagcgccaCGUCCCCGGGGaCCacgcgcgggUUCUGg -3'
miRNA:   3'- cCCGGG------------GCAGGGGCCCCaGGa--------AGGAC- -5'
5697 5' -64.8 NC_001806.1 + 150255 0.67 0.476305
Target:  5'- uGGCCUgcguCGgugCCCCGGGGcuucccgCCUUCCc- -3'
miRNA:   3'- cCCGGG----GCa--GGGGCCCCa------GGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 144822 0.67 0.476305
Target:  5'- gGGGcCCCCGaCCgCGGcGGUCCgggccccgUCCg- -3'
miRNA:   3'- -CCC-GGGGCaGGgGCC-CCAGGa-------AGGac -5'
5697 5' -64.8 NC_001806.1 + 12924 0.67 0.476305
Target:  5'- aGGGCCgaaUCCUCGGGGU-CUUCCg- -3'
miRNA:   3'- -CCCGGggcAGGGGCCCCAgGAAGGac -5'
5697 5' -64.8 NC_001806.1 + 12336 0.67 0.485152
Target:  5'- cGGGCCCCaaggCCCCGGcGUCCa----- -3'
miRNA:   3'- -CCCGGGGca--GGGGCCcCAGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 147673 0.67 0.485152
Target:  5'- cGGCUCCG-CCCCGGGGgCCg----- -3'
miRNA:   3'- cCCGGGGCaGGGGCCCCaGGaaggac -5'
5697 5' -64.8 NC_001806.1 + 46077 0.67 0.494077
Target:  5'- cGGcGUCCCGUUUCCGGGGcgguuuugUCCggcccggggCCUGc -3'
miRNA:   3'- -CC-CGGGGCAGGGGCCCC--------AGGaa-------GGAC- -5'
5697 5' -64.8 NC_001806.1 + 105744 0.67 0.503076
Target:  5'- cGGGCCCCGUgggUUagggaCGGGGUCCc-CCa- -3'
miRNA:   3'- -CCCGGGGCA---GGg----GCCCCAGGaaGGac -5'
5697 5' -64.8 NC_001806.1 + 132512 0.66 0.512146
Target:  5'- gGGGCCCUGgcCCCCGucuuugCCUUUCUGg -3'
miRNA:   3'- -CCCGGGGCa-GGGGCccca--GGAAGGAC- -5'
5697 5' -64.8 NC_001806.1 + 20174 0.66 0.512146
Target:  5'- cGGG-CCCGcCCCCGGGG-CCggCg-- -3'
miRNA:   3'- -CCCgGGGCaGGGGCCCCaGGaaGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.