miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5698 3' -56.3 NC_001806.1 + 20405 0.66 0.905259
Target:  5'- gACCGGgGGgc-CCGGGgACg---GCCa -3'
miRNA:   3'- -UGGCCgCCaaaGGCCC-UGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 13269 0.66 0.905259
Target:  5'- uGCCGGCGGUcucaaacgCgGGGGC--GUGCa- -3'
miRNA:   3'- -UGGCCGCCAaa------GgCCCUGauUACGga -5'
5698 3' -56.3 NC_001806.1 + 151692 0.66 0.905259
Target:  5'- gGCCGGgGGggcCCGGG-CUGcccGCCg -3'
miRNA:   3'- -UGGCCgCCaaaGGCCCuGAUua-CGGa -5'
5698 3' -56.3 NC_001806.1 + 80605 0.66 0.904013
Target:  5'- uCCGGCGGUUcgguUCCGGGcACcgcaaaaccGCCc -3'
miRNA:   3'- uGGCCGCCAA----AGGCCC-UGauua-----CGGa -5'
5698 3' -56.3 NC_001806.1 + 137196 0.66 0.898934
Target:  5'- uGCa-GUGG-UUCCGGGACgugGcgGCCUu -3'
miRNA:   3'- -UGgcCGCCaAAGGCCCUGa--UuaCGGA- -5'
5698 3' -56.3 NC_001806.1 + 46470 0.66 0.898934
Target:  5'- -gCGGCGGUccagcUCUGGGAC--AUGUCg -3'
miRNA:   3'- ugGCCGCCAa----AGGCCCUGauUACGGa -5'
5698 3' -56.3 NC_001806.1 + 23936 0.66 0.878587
Target:  5'- gGCCGGCGG----CGGGGcCUGGggggGCCg -3'
miRNA:   3'- -UGGCCGCCaaagGCCCU-GAUUa---CGGa -5'
5698 3' -56.3 NC_001806.1 + 3019 0.66 0.878587
Target:  5'- gUCGGCGGcgUCCGGuGCgcugGCCg -3'
miRNA:   3'- uGGCCGCCaaAGGCCcUGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 9305 0.66 0.871359
Target:  5'- cGCCGGCGGUcgcccagUUCGGcGACcgacgUGggGCCUc -3'
miRNA:   3'- -UGGCCGCCAa------AGGCC-CUG-----AUuaCGGA- -5'
5698 3' -56.3 NC_001806.1 + 151271 0.66 0.871359
Target:  5'- cGCCgGGCGGUgggggCCGGGGCcggGggGCg- -3'
miRNA:   3'- -UGG-CCGCCAaa---GGCCCUGa--UuaCGga -5'
5698 3' -56.3 NC_001806.1 + 119749 0.66 0.871359
Target:  5'- gGCCGGCGGcgacggCCGGacuGGCUGuggaGCCg -3'
miRNA:   3'- -UGGCCGCCaaa---GGCC---CUGAUua--CGGa -5'
5698 3' -56.3 NC_001806.1 + 3669 0.67 0.863918
Target:  5'- cGCCGGCG----CCGGGGCUccccGcgGCCc -3'
miRNA:   3'- -UGGCCGCcaaaGGCCCUGA----UuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 46073 0.67 0.848415
Target:  5'- gACgCGGCGucccGUUUCCGGGGCgguuuUGUCc -3'
miRNA:   3'- -UG-GCCGC----CAAAGGCCCUGauu--ACGGa -5'
5698 3' -56.3 NC_001806.1 + 24813 0.67 0.848415
Target:  5'- cGCCGGCGccgcCCGGGAUUcgcuggGCCUc -3'
miRNA:   3'- -UGGCCGCcaaaGGCCCUGAuua---CGGA- -5'
5698 3' -56.3 NC_001806.1 + 5934 0.67 0.848415
Target:  5'- gGCCGGCGGg---CGGGACc---GCCc -3'
miRNA:   3'- -UGGCCGCCaaagGCCCUGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 56772 0.67 0.840366
Target:  5'- gACgCGGCGGUggUCGGGGC-AA-GCCc -3'
miRNA:   3'- -UG-GCCGCCAaaGGCCCUGaUUaCGGa -5'
5698 3' -56.3 NC_001806.1 + 151439 0.67 0.837093
Target:  5'- cACCGGCGGggggcggcggCGGGGCg---GCCg -3'
miRNA:   3'- -UGGCCGCCaaag------GCCCUGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 100387 0.67 0.832128
Target:  5'- cGCCgGGCGGcg-CgGGGGCcggGGUGCCc -3'
miRNA:   3'- -UGG-CCGCCaaaGgCCCUGa--UUACGGa -5'
5698 3' -56.3 NC_001806.1 + 3354 0.67 0.832128
Target:  5'- gGCUGGCGGg--CCGGGcCccg-GCCa -3'
miRNA:   3'- -UGGCCGCCaaaGGCCCuGauuaCGGa -5'
5698 3' -56.3 NC_001806.1 + 50665 0.68 0.823709
Target:  5'- cACCGGCG----CCGGGACgacgcgGcgGCCa -3'
miRNA:   3'- -UGGCCGCcaaaGGCCCUGa-----UuaCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.