miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 5' -55.9 NC_001806.1 + 54689 1.11 0.002146
Target:  5'- gUCCCCCAGGAACCAGGCAAACGUCACg -3'
miRNA:   3'- -AGGGGGUCCUUGGUCCGUUUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 83029 0.9 0.053581
Target:  5'- cCCCCCGGGGuCCuGGCGAGCGUCGCg -3'
miRNA:   3'- aGGGGGUCCUuGGuCCGUUUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 64469 0.78 0.307701
Target:  5'- aCCCCCAGGAugCgguaaAGGCGAGCGgaccggcUCACc -3'
miRNA:   3'- aGGGGGUCCUugG-----UCCGUUUGC-------AGUG- -5'
5701 5' -55.9 NC_001806.1 + 4130 0.77 0.353469
Target:  5'- cCCCCCAGaGGcCCGGGCGGcUGUCGCc -3'
miRNA:   3'- aGGGGGUC-CUuGGUCCGUUuGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 108734 0.76 0.402982
Target:  5'- cCCCCCGGGGAC--GGCgAGACGUUGCg -3'
miRNA:   3'- aGGGGGUCCUUGguCCG-UUUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 3422 0.75 0.444707
Target:  5'- gCCUCCAGGAucccgcggcaggcgGCCAGGCAcucGACGgcCACg -3'
miRNA:   3'- aGGGGGUCCU--------------UGGUCCGU---UUGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 121399 0.75 0.447452
Target:  5'- cCCCCCcGGAGCCGGGCGcgUGcugCGCc -3'
miRNA:   3'- aGGGGGuCCUUGGUCCGUuuGCa--GUG- -5'
5701 5' -55.9 NC_001806.1 + 10683 0.74 0.475404
Target:  5'- aCCCCCGgucgcagauGGGGCCGGGgGGGCGUaCGCc -3'
miRNA:   3'- aGGGGGU---------CCUUGGUCCgUUUGCA-GUG- -5'
5701 5' -55.9 NC_001806.1 + 151258 0.74 0.475404
Target:  5'- cCCCCCGGGcccacGCCGGGCGGugGggGCc -3'
miRNA:   3'- aGGGGGUCCu----UGGUCCGUUugCagUG- -5'
5701 5' -55.9 NC_001806.1 + 67508 0.74 0.484915
Target:  5'- aCCCCCugGGGAGCCcuGGGC---CGUCGCg -3'
miRNA:   3'- aGGGGG--UCCUUGG--UCCGuuuGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 28293 0.73 0.553747
Target:  5'- aCCCCCacucauacacGGGAGCCGGGCGccauguuggGGCGcCAUg -3'
miRNA:   3'- aGGGGG----------UCCUUGGUCCGU---------UUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 140119 0.72 0.573985
Target:  5'- gCCCCCagAGGAgacGCCAGGC--GCGgCACa -3'
miRNA:   3'- aGGGGG--UCCU---UGGUCCGuuUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 3152 0.72 0.573985
Target:  5'- -gCCCCGGcGACCAGGCucACGgcgCGCa -3'
miRNA:   3'- agGGGGUCcUUGGUCCGuuUGCa--GUG- -5'
5701 5' -55.9 NC_001806.1 + 117824 0.72 0.573985
Target:  5'- -gCCCCGGGAugcaggGCCAGGaCcuGCGUCAg -3'
miRNA:   3'- agGGGGUCCU------UGGUCC-GuuUGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 75824 0.72 0.604638
Target:  5'- aCCCCCGGGAcuuccgaaAgCGGGCGAACaggCGCu -3'
miRNA:   3'- aGGGGGUCCU--------UgGUCCGUUUGca-GUG- -5'
5701 5' -55.9 NC_001806.1 + 9097 0.72 0.605664
Target:  5'- gCCCCCcGGAgccaccgagcggccaGCCAGGCGAcaaacagggaggggGCGUCGa -3'
miRNA:   3'- aGGGGGuCCU---------------UGGUCCGUU--------------UGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 102352 0.72 0.611824
Target:  5'- gUCCCCCGGGGccGCCGGgaGCAccccguggugcaucAGCGUgGCg -3'
miRNA:   3'- -AGGGGGUCCU--UGGUC--CGU--------------UUGCAgUG- -5'
5701 5' -55.9 NC_001806.1 + 71265 0.72 0.614906
Target:  5'- gUCUCCCAGGGACCuggAGGUccGCGaCGCc -3'
miRNA:   3'- -AGGGGGUCCUUGG---UCCGuuUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 30286 0.71 0.656033
Target:  5'- gCCCCCGGGGcggaGCCGGccgcccgccccGCGGACG-CGCg -3'
miRNA:   3'- aGGGGGUCCU----UGGUC-----------CGUUUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 27880 0.71 0.676513
Target:  5'- cUCCCCUGGGAcgcgcgGCCauuGGGgGAAuCGUCACu -3'
miRNA:   3'- -AGGGGGUCCU------UGG---UCCgUUU-GCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.