miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5701 5' -55.9 NC_001806.1 + 2735 0.67 0.876059
Target:  5'- gCCCUCGGcGGGCCGGcGCGAcACGgcCACg -3'
miRNA:   3'- aGGGGGUC-CUUGGUC-CGUU-UGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 3152 0.72 0.573985
Target:  5'- -gCCCCGGcGACCAGGCucACGgcgCGCa -3'
miRNA:   3'- agGGGGUCcUUGGUCCGuuUGCa--GUG- -5'
5701 5' -55.9 NC_001806.1 + 3378 0.69 0.736781
Target:  5'- -gCCCCGGGAcggccGCCAGGUcgcCGUCGa -3'
miRNA:   3'- agGGGGUCCU-----UGGUCCGuuuGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 3422 0.75 0.444707
Target:  5'- gCCUCCAGGAucccgcggcaggcgGCCAGGCAcucGACGgcCACg -3'
miRNA:   3'- aGGGGGUCCU--------------UGGUCCGU---UUGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 4130 0.77 0.353469
Target:  5'- cCCCCCAGaGGcCCGGGCGGcUGUCGCc -3'
miRNA:   3'- aGGGGGUC-CUuGGUCCGUUuGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 4282 0.68 0.829732
Target:  5'- aCCCgCCGGGGcuGCCcGGCcgugaagcggcccguGGCGUCGCg -3'
miRNA:   3'- aGGG-GGUCCU--UGGuCCGu--------------UUGCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 5168 0.69 0.773366
Target:  5'- aUCCUCCGGGGAUacggcugcgacGGCGGACGUagCACg -3'
miRNA:   3'- -AGGGGGUCCUUGgu---------CCGUUUGCA--GUG- -5'
5701 5' -55.9 NC_001806.1 + 5264 0.67 0.853383
Target:  5'- aCCCCCGccgucgacgcGGAACUAGcGCGGACcgGUCGa -3'
miRNA:   3'- aGGGGGU----------CCUUGGUC-CGUUUG--CAGUg -5'
5701 5' -55.9 NC_001806.1 + 7023 0.66 0.896757
Target:  5'- aCCCCCGGccccaguuGGGCCGGGCGacccaGAUGuUUACu -3'
miRNA:   3'- aGGGGGUC--------CUUGGUCCGU-----UUGC-AGUG- -5'
5701 5' -55.9 NC_001806.1 + 7276 0.69 0.775244
Target:  5'- gUUCCCCGGGAGCCccGGGUuccGCGacCACc -3'
miRNA:   3'- -AGGGGGUCCUUGG--UCCGuu-UGCa-GUG- -5'
5701 5' -55.9 NC_001806.1 + 9097 0.72 0.605664
Target:  5'- gCCCCCcGGAgccaccgagcggccaGCCAGGCGAcaaacagggaggggGCGUCGa -3'
miRNA:   3'- aGGGGGuCCU---------------UGGUCCGUU--------------UGCAGUg -5'
5701 5' -55.9 NC_001806.1 + 10070 0.7 0.696846
Target:  5'- -aCCCCGcguagcugcGGAcgGCCAGGCgAGACGUcCACg -3'
miRNA:   3'- agGGGGU---------CCU--UGGUCCG-UUUGCA-GUG- -5'
5701 5' -55.9 NC_001806.1 + 10683 0.74 0.475404
Target:  5'- aCCCCCGgucgcagauGGGGCCGGGgGGGCGUaCGCc -3'
miRNA:   3'- aGGGGGU---------CCUUGGUCCgUUUGCA-GUG- -5'
5701 5' -55.9 NC_001806.1 + 11976 0.7 0.696846
Target:  5'- -aCCCCAGGAcaaaCAGGCuGGCGUUugGCg -3'
miRNA:   3'- agGGGGUCCUug--GUCCGuUUGCAG--UG- -5'
5701 5' -55.9 NC_001806.1 + 14372 0.69 0.775244
Target:  5'- cCCCCCAgGGGGCUGGGguGAgGggaCACu -3'
miRNA:   3'- aGGGGGU-CCUUGGUCCguUUgCa--GUG- -5'
5701 5' -55.9 NC_001806.1 + 15180 0.69 0.746558
Target:  5'- --gCCCGGGGACUGGGguAGggUGUCACg -3'
miRNA:   3'- aggGGGUCCUUGGUCCguUU--GCAGUG- -5'
5701 5' -55.9 NC_001806.1 + 16870 0.68 0.802768
Target:  5'- gUCUCCGGGGGcggggaguCCAGGCAcGCGUCc- -3'
miRNA:   3'- aGGGGGUCCUU--------GGUCCGUuUGCAGug -5'
5701 5' -55.9 NC_001806.1 + 18845 0.66 0.890086
Target:  5'- -gCCCCAGGuuccGCCGGacaccugcaGCAAACGgCACc -3'
miRNA:   3'- agGGGGUCCu---UGGUC---------CGUUUGCaGUG- -5'
5701 5' -55.9 NC_001806.1 + 20181 0.71 0.676513
Target:  5'- gCCCCCGGG-GCCGGcGCGGA-GUCGg -3'
miRNA:   3'- aGGGGGUCCuUGGUC-CGUUUgCAGUg -5'
5701 5' -55.9 NC_001806.1 + 22300 0.7 0.72095
Target:  5'- gUCCCCgGGGAcguggcgcuggACCAGGCcugcuuccggaucucGGGCGcCGCg -3'
miRNA:   3'- -AGGGGgUCCU-----------UGGUCCG---------------UUUGCaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.