miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 2953 0.67 0.887054
Target:  5'- cCGGGCCGggacucuugcgcuuGCGCCCcu-CCcGCGGCGc -3'
miRNA:   3'- aGCUCGGU--------------UGCGGGacuGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 136367 0.67 0.882235
Target:  5'- -gGGGCCGGCGCgCUccgcGGCCuccGCGACc -3'
miRNA:   3'- agCUCGGUUGCGgGA----CUGGu--UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 70683 0.67 0.882235
Target:  5'- aCGAGgaCAACGUgCUGGCCGugGucCGg -3'
miRNA:   3'- aGCUCg-GUUGCGgGACUGGUugCu-GC- -5'
5703 3' -55.9 NC_001806.1 + 85900 0.67 0.882235
Target:  5'- uUCaGGgCGACGCCgUGGgCAAUGGCGu -3'
miRNA:   3'- -AGcUCgGUUGCGGgACUgGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 124965 0.67 0.882235
Target:  5'- cCGAGaCCAacacccACGgCCUGGCguAUGACGu -3'
miRNA:   3'- aGCUC-GGU------UGCgGGACUGguUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 17807 0.67 0.882235
Target:  5'- cCGuGCCGACucgguuuuuGCCCgagugGACCGugGCGugGa -3'
miRNA:   3'- aGCuCGGUUG---------CGGGa----CUGGU--UGCugC- -5'
5703 3' -55.9 NC_001806.1 + 113827 0.67 0.882235
Target:  5'- gUGGGaCUguGACGCCCUGAU--GCGGCGc -3'
miRNA:   3'- aGCUC-GG--UUGCGGGACUGguUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 20788 0.67 0.882235
Target:  5'- aUGAGCCcgagGACGCCCcGAUCGuccacacggagcGCGGCu -3'
miRNA:   3'- aGCUCGG----UUGCGGGaCUGGU------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 2726 0.67 0.882235
Target:  5'- -gGGGUCGGgGCCCUcggcgGGCCGgcGCGACa -3'
miRNA:   3'- agCUCGGUUgCGGGA-----CUGGU--UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 137570 0.67 0.882235
Target:  5'- aCGaAGC--GCGCCCUGGCCGccuccggggGCGAgGa -3'
miRNA:   3'- aGC-UCGguUGCGGGACUGGU---------UGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 79092 0.67 0.875167
Target:  5'- cUCGccGCCAGCGCC---ACCGACGAgGa -3'
miRNA:   3'- -AGCu-CGGUUGCGGgacUGGUUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 4913 0.67 0.875167
Target:  5'- gCGAGacggcguccCCGGCGUCCUcGCCGGCGuCGg -3'
miRNA:   3'- aGCUC---------GGUUGCGGGAcUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 26797 0.67 0.875167
Target:  5'- -gGAGCaccuGGCGCgCCUGcGCCuGCGACGc -3'
miRNA:   3'- agCUCGg---UUGCG-GGAC-UGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 89751 0.67 0.875167
Target:  5'- gCG-GCC-ACGCCCaccGGCUGAUGACGc -3'
miRNA:   3'- aGCuCGGuUGCGGGa--CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 121927 0.67 0.867884
Target:  5'- cCGGGCCGuUGCCCgGGCCuccucaAGCGAUc -3'
miRNA:   3'- aGCUCGGUuGCGGGaCUGG------UUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 123515 0.67 0.867884
Target:  5'- cUCGAuCCGGCGCuuggugagcgCCUGgacGCCGugGACGa -3'
miRNA:   3'- -AGCUcGGUUGCG----------GGAC---UGGUugCUGC- -5'
5703 3' -55.9 NC_001806.1 + 107670 0.67 0.867884
Target:  5'- gUUGGGCacacuaCAACGCCCUGAUCcGCGcCu -3'
miRNA:   3'- -AGCUCG------GUUGCGGGACUGGuUGCuGc -5'
5703 3' -55.9 NC_001806.1 + 100135 0.67 0.867884
Target:  5'- cCGcGGCUAugGCCCccACCAACG-CGg -3'
miRNA:   3'- aGC-UCGGUugCGGGacUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 95597 0.67 0.867884
Target:  5'- gCGGGUCAGCGUCCacggcgaggUGcuGCCcGCGACGu -3'
miRNA:   3'- aGCUCGGUUGCGGG---------AC--UGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 74343 0.67 0.867884
Target:  5'- -gGGGCCAgacgcuggACGCCCccgagGACCuGGCGGCc -3'
miRNA:   3'- agCUCGGU--------UGCGGGa----CUGG-UUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.