miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 112031 0.66 0.914219
Target:  5'- cCGAgGCCAuCGCCCUG-CUcACGGgGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGACuGGuUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 120945 0.66 0.914219
Target:  5'- -aGAGUCGACGaCCUgggGACgGACGuCGa -3'
miRNA:   3'- agCUCGGUUGC-GGGa--CUGgUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 72511 0.66 0.914219
Target:  5'- gCGGGCCugggggaGCCCUGcguCGGCGugGg -3'
miRNA:   3'- aGCUCGGuug----CGGGACug-GUUGCugC- -5'
5703 3' -55.9 NC_001806.1 + 97372 0.66 0.912462
Target:  5'- cCGGGCCAcgGCGCC--GACCAcccggaaccugcucACGACc -3'
miRNA:   3'- aGCUCGGU--UGCGGgaCUGGU--------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 12431 0.66 0.908281
Target:  5'- aCGAGCaCcAgGCCCUGcaACgGGCGGCa -3'
miRNA:   3'- aGCUCG-GuUgCGGGAC--UGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 146645 0.66 0.902111
Target:  5'- cCGGGUCGACGCCCccugcuccccgGACC-ACGGg- -3'
miRNA:   3'- aGCUCGGUUGCGGGa----------CUGGuUGCUgc -5'
5703 3' -55.9 NC_001806.1 + 139741 0.66 0.902111
Target:  5'- ---cGCCAGgGCCucgCUGACCAGCGcACu -3'
miRNA:   3'- agcuCGGUUgCGG---GACUGGUUGC-UGc -5'
5703 3' -55.9 NC_001806.1 + 115114 0.66 0.902111
Target:  5'- uUCGGGU--GCGCCCagGugCcGCGGCGc -3'
miRNA:   3'- -AGCUCGguUGCGGGa-CugGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23220 0.66 0.902111
Target:  5'- gCG-GCCAGCGCaCCggacGCCGcCGACGc -3'
miRNA:   3'- aGCuCGGUUGCG-GGac--UGGUuGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 93421 0.66 0.901482
Target:  5'- -gGAGCUGACcgcgcguGCCCUGGagcgcggCAACGGCGa -3'
miRNA:   3'- agCUCGGUUG-------CGGGACUg------GUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 64262 0.67 0.895712
Target:  5'- -aGGGCCGAUugcaGCCCccgcucGACCAGCGuguGCGg -3'
miRNA:   3'- agCUCGGUUG----CGGGa-----CUGGUUGC---UGC- -5'
5703 3' -55.9 NC_001806.1 + 104737 0.67 0.895712
Target:  5'- aUGGGCaugccuuAUGCCgUGACCGACGcCGu -3'
miRNA:   3'- aGCUCGgu-----UGCGGgACUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 32993 0.67 0.895712
Target:  5'- cCGGGCCGGgcCGCCaCgggGGCCGGCcguuGGCGg -3'
miRNA:   3'- aGCUCGGUU--GCGG-Ga--CUGGUUG----CUGC- -5'
5703 3' -55.9 NC_001806.1 + 21401 0.67 0.895712
Target:  5'- aCGAucCCGACGCCC-GACCccGCGGCc -3'
miRNA:   3'- aGCUc-GGUUGCGGGaCUGGu-UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 131446 0.67 0.895712
Target:  5'- uUCGGuaCGugguCGUCCgcgGACCGGCGGCGc -3'
miRNA:   3'- -AGCUcgGUu---GCGGGa--CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 38274 0.67 0.895712
Target:  5'- aCGGGCgGAcCGCCg-GGCgAGCGGCGu -3'
miRNA:   3'- aGCUCGgUU-GCGGgaCUGgUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 151283 0.67 0.889085
Target:  5'- -gGGGCCGGgGCCgggGGgCGGCGGCGg -3'
miRNA:   3'- agCUCGGUUgCGGga-CUgGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 27249 0.67 0.889085
Target:  5'- gCGGGCCGccucggggGCGggaCUGGCCAAuCGGCGg -3'
miRNA:   3'- aGCUCGGU--------UGCgg-GACUGGUU-GCUGC- -5'
5703 3' -55.9 NC_001806.1 + 43400 0.67 0.889085
Target:  5'- cUCGugaaGGCCcGCGCCUUGGCCcGC-ACGu -3'
miRNA:   3'- -AGC----UCGGuUGCGGGACUGGuUGcUGC- -5'
5703 3' -55.9 NC_001806.1 + 133270 0.67 0.889085
Target:  5'- -aGGGCCAACGCCgUccGGCUG-CGGCa -3'
miRNA:   3'- agCUCGGUUGCGGgA--CUGGUuGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.