miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 21486 0.72 0.627246
Target:  5'- aCGcAGCCGACGCC---GCCGGCGACc -3'
miRNA:   3'- aGC-UCGGUUGCGGgacUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 116937 0.72 0.644523
Target:  5'- gCGGGCCAACuaggagacaccuugGCCCUGGCUccCGugGu -3'
miRNA:   3'- aGCUCGGUUG--------------CGGGACUGGuuGCugC- -5'
5703 3' -55.9 NC_001806.1 + 1606 0.71 0.656704
Target:  5'- aCGGGCCGcagcggcGCGCCCaGGCCccagcgcgcgcaGGCGGCGu -3'
miRNA:   3'- aGCUCGGU-------UGCGGGaCUGG------------UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23985 0.71 0.667846
Target:  5'- gCGGGCUguccugccugcuGGCgGCCCUGGCCAAcCGGCu -3'
miRNA:   3'- aGCUCGG------------UUG-CGGGACUGGUU-GCUGc -5'
5703 3' -55.9 NC_001806.1 + 35550 0.71 0.667846
Target:  5'- gCGAGCCGcucggcGCGCCCggcGCCGcgccgaACGACGu -3'
miRNA:   3'- aGCUCGGU------UGCGGGac-UGGU------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 150989 0.71 0.677944
Target:  5'- aCGAGCCGcgGCGCgCCaGGCgGGCGGCc -3'
miRNA:   3'- aGCUCGGU--UGCG-GGaCUGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 113530 0.71 0.677944
Target:  5'- gCGAGCaCGucuucuGCGCCCUGGCCcggcuCGugGu -3'
miRNA:   3'- aGCUCG-GU------UGCGGGACUGGuu---GCugC- -5'
5703 3' -55.9 NC_001806.1 + 22775 0.71 0.698023
Target:  5'- cCGGGCgCcGCGCCCaGGCCGGCcGCGu -3'
miRNA:   3'- aGCUCG-GuUGCGGGaCUGGUUGcUGC- -5'
5703 3' -55.9 NC_001806.1 + 102836 0.71 0.698023
Target:  5'- aCGAGCCGGuCGCCCcgcGGCCcGCGuACa -3'
miRNA:   3'- aGCUCGGUU-GCGGGa--CUGGuUGC-UGc -5'
5703 3' -55.9 NC_001806.1 + 21159 0.71 0.705997
Target:  5'- aCGGGCCGcCGCCCaccccgagcccaGACC-GCGACGa -3'
miRNA:   3'- aGCUCGGUuGCGGGa-----------CUGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 94867 0.71 0.706991
Target:  5'- --aGGCCGACGCCCUG-CUGgaggcgcACGACGu -3'
miRNA:   3'- agcUCGGUUGCGGGACuGGU-------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 97676 0.71 0.706991
Target:  5'- gUGGGCCAGcCGCaguacuaCCUGGCCAAUGGgGg -3'
miRNA:   3'- aGCUCGGUU-GCG-------GGACUGGUUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 74138 0.7 0.717883
Target:  5'- -aGcGCCAAgGCUCUacaGGCCAGCGACa -3'
miRNA:   3'- agCuCGGUUgCGGGA---CUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 24282 0.7 0.717883
Target:  5'- cCGuGCaguGCGCCgugcgCUGGCCGGCGGCGc -3'
miRNA:   3'- aGCuCGgu-UGCGG-----GACUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 142028 0.7 0.717883
Target:  5'- gCGAggagcGCCGcCgGCCCUGACgAGCGACa -3'
miRNA:   3'- aGCU-----CGGUuG-CGGGACUGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 6135 0.7 0.72575
Target:  5'- gCGA-CCGACGCCCgcagacggcgccGGCCAcgaACGACGg -3'
miRNA:   3'- aGCUcGGUUGCGGGa-----------CUGGU---UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 6591 0.7 0.72673
Target:  5'- uUCGuGCCuucccgcaggaggAACGUCCUcgucgaggcGACCGGCGGCGa -3'
miRNA:   3'- -AGCuCGG-------------UUGCGGGA---------CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 20173 0.7 0.727709
Target:  5'- cCGGGCC--CGCCCccggGGCCGGCG-CGg -3'
miRNA:   3'- aGCUCGGuuGCGGGa---CUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 23728 0.7 0.727709
Target:  5'- cCGGGCCcgcccccgcCGCCCaGGCCGcguGCGGCGg -3'
miRNA:   3'- aGCUCGGuu-------GCGGGaCUGGU---UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 113986 0.7 0.727709
Target:  5'- cCGAGCCGcggACGCCgcggaUGACCGGCcGCa -3'
miRNA:   3'- aGCUCGGU---UGCGGg----ACUGGUUGcUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.