Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5703 | 3' | -55.9 | NC_001806.1 | + | 53316 | 1.1 | 0.002666 |
Target: 5'- aUCGAGCCAACGCCCUGACCAACGACGg -3' miRNA: 3'- -AGCUCGGUUGCGGGACUGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 35782 | 0.81 | 0.204023 |
Target: 5'- -gGGGCUuuGGCGCCCgacGACCAGCGACGa -3' miRNA: 3'- agCUCGG--UUGCGGGa--CUGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 56619 | 0.8 | 0.236107 |
Target: 5'- uUCGGGCCGcGCGaCCCUGGCCGguGCGACc -3' miRNA: 3'- -AGCUCGGU-UGC-GGGACUGGU--UGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 79542 | 0.79 | 0.278769 |
Target: 5'- aCGcGGCCGGCGCCCgugGGCCcccGCGACGa -3' miRNA: 3'- aGC-UCGGUUGCGGGa--CUGGu--UGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 4743 | 0.79 | 0.285342 |
Target: 5'- cCGGGCCGGgGCCCggucGCCGGCGGCGu -3' miRNA: 3'- aGCUCGGUUgCGGGac--UGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 89526 | 0.77 | 0.357019 |
Target: 5'- gCGAGCUgcugcgcGGCGCCCcGGCCGGCGGCc -3' miRNA: 3'- aGCUCGG-------UUGCGGGaCUGGUUGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 7868 | 0.76 | 0.433278 |
Target: 5'- aCGucGCCccuGugGCCCUGGCgGACGGCGg -3' miRNA: 3'- aGCu-CGG---UugCGGGACUGgUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 42598 | 0.75 | 0.45127 |
Target: 5'- aCGAGCgAgcguagggacGCGCCCUGAUCAuacugcgccGCGGCGg -3' miRNA: 3'- aGCUCGgU----------UGCGGGACUGGU---------UGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 104994 | 0.75 | 0.457664 |
Target: 5'- aUCGAccgccuggccaaacGCCAGCGCCCcGGCgAGCGGCu -3' miRNA: 3'- -AGCU--------------CGGUUGCGGGaCUGgUUGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 119717 | 0.75 | 0.460419 |
Target: 5'- gUCGAGUgguuggaucgCGGaugggaaGCCCUGGCCGGCGGCGa -3' miRNA: 3'- -AGCUCG----------GUUg------CGGGACUGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 24729 | 0.74 | 0.497951 |
Target: 5'- uUUGcGCCcGCGCCCUGcuggagcCCGACGACGa -3' miRNA: 3'- -AGCuCGGuUGCGGGACu------GGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 59845 | 0.74 | 0.497951 |
Target: 5'- -gGAGCCAAgGCcauCCUGGCCcgcACGACGg -3' miRNA: 3'- agCUCGGUUgCG---GGACUGGu--UGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 140821 | 0.74 | 0.507549 |
Target: 5'- gUGAGCUggcGACGCCCUaauucgucGAUCGACGACa -3' miRNA: 3'- aGCUCGG---UUGCGGGA--------CUGGUUGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 23194 | 0.74 | 0.526974 |
Target: 5'- -aGAGCCuGCGCCCccuGCUGGCGGCGg -3' miRNA: 3'- agCUCGGuUGCGGGac-UGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 22211 | 0.73 | 0.566596 |
Target: 5'- gCGAcGCCGcgcagcaguACGCCCUGAUCAcGCGGCu -3' miRNA: 3'- aGCU-CGGU---------UGCGGGACUGGU-UGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 23912 | 0.73 | 0.586702 |
Target: 5'- cUCGccgcuGCCgGGCGaggaCCUGGCCGGCGGCGg -3' miRNA: 3'- -AGCu----CGG-UUGCg---GGACUGGUUGCUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 89287 | 0.72 | 0.605923 |
Target: 5'- gCGGGCgCAAaaaacccggacgcCGCCCUGGCCGcCGACu -3' miRNA: 3'- aGCUCG-GUU-------------GCGGGACUGGUuGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 3359 | 0.72 | 0.606937 |
Target: 5'- gCGGGCCGG-GCCCcGGCCAGCcccggGACGg -3' miRNA: 3'- aGCUCGGUUgCGGGaCUGGUUG-----CUGC- -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 24163 | 0.72 | 0.617086 |
Target: 5'- ---cGCCAGCGCCggcGACCGGCGGCu -3' miRNA: 3'- agcuCGGUUGCGGga-CUGGUUGCUGc -5' |
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5703 | 3' | -55.9 | NC_001806.1 | + | 76222 | 0.72 | 0.627246 |
Target: 5'- gCGAucGCCugGACGCCCUccgGGCCGACGcGCGg -3' miRNA: 3'- aGCU--CGG--UUGCGGGA---CUGGUUGC-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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