miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 5819 0.66 0.930623
Target:  5'- aCGAGCCccgcGCGCCCguUGGCCGucccCGGg- -3'
miRNA:   3'- aGCUCGGu---UGCGGG--ACUGGUu---GCUgc -5'
5703 3' -55.9 NC_001806.1 + 140821 0.74 0.507549
Target:  5'- gUGAGCUggcGACGCCCUaauucgucGAUCGACGACa -3'
miRNA:   3'- aGCUCGG---UUGCGGGA--------CUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 23194 0.74 0.526974
Target:  5'- -aGAGCCuGCGCCCccuGCUGGCGGCGg -3'
miRNA:   3'- agCUCGGuUGCGGGac-UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 22211 0.73 0.566596
Target:  5'- gCGAcGCCGcgcagcaguACGCCCUGAUCAcGCGGCu -3'
miRNA:   3'- aGCU-CGGU---------UGCGGGACUGGU-UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 23912 0.73 0.586702
Target:  5'- cUCGccgcuGCCgGGCGaggaCCUGGCCGGCGGCGg -3'
miRNA:   3'- -AGCu----CGG-UUGCg---GGACUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 89287 0.72 0.605923
Target:  5'- gCGGGCgCAAaaaacccggacgcCGCCCUGGCCGcCGACu -3'
miRNA:   3'- aGCUCG-GUU-------------GCGGGACUGGUuGCUGc -5'
5703 3' -55.9 NC_001806.1 + 3359 0.72 0.606937
Target:  5'- gCGGGCCGG-GCCCcGGCCAGCcccggGACGg -3'
miRNA:   3'- aGCUCGGUUgCGGGaCUGGUUG-----CUGC- -5'
5703 3' -55.9 NC_001806.1 + 24163 0.72 0.617086
Target:  5'- ---cGCCAGCGCCggcGACCGGCGGCu -3'
miRNA:   3'- agcuCGGUUGCGGga-CUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 21486 0.72 0.627246
Target:  5'- aCGcAGCCGACGCC---GCCGGCGACc -3'
miRNA:   3'- aGC-UCGGUUGCGGgacUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 24729 0.74 0.497951
Target:  5'- uUUGcGCCcGCGCCCUGcuggagcCCGACGACGa -3'
miRNA:   3'- -AGCuCGGuUGCGGGACu------GGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 59845 0.74 0.497951
Target:  5'- -gGAGCCAAgGCcauCCUGGCCcgcACGACGg -3'
miRNA:   3'- agCUCGGUUgCG---GGACUGGu--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 119717 0.75 0.460419
Target:  5'- gUCGAGUgguuggaucgCGGaugggaaGCCCUGGCCGGCGGCGa -3'
miRNA:   3'- -AGCUCG----------GUUg------CGGGACUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 35782 0.81 0.204023
Target:  5'- -gGGGCUuuGGCGCCCgacGACCAGCGACGa -3'
miRNA:   3'- agCUCGG--UUGCGGGa--CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 56619 0.8 0.236107
Target:  5'- uUCGGGCCGcGCGaCCCUGGCCGguGCGACc -3'
miRNA:   3'- -AGCUCGGU-UGC-GGGACUGGU--UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 79542 0.79 0.278769
Target:  5'- aCGcGGCCGGCGCCCgugGGCCcccGCGACGa -3'
miRNA:   3'- aGC-UCGGUUGCGGGa--CUGGu--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 4743 0.79 0.285342
Target:  5'- cCGGGCCGGgGCCCggucGCCGGCGGCGu -3'
miRNA:   3'- aGCUCGGUUgCGGGac--UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 89526 0.77 0.357019
Target:  5'- gCGAGCUgcugcgcGGCGCCCcGGCCGGCGGCc -3'
miRNA:   3'- aGCUCGG-------UUGCGGGaCUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 7868 0.76 0.433278
Target:  5'- aCGucGCCccuGugGCCCUGGCgGACGGCGg -3'
miRNA:   3'- aGCu-CGG---UugCGGGACUGgUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 42598 0.75 0.45127
Target:  5'- aCGAGCgAgcguagggacGCGCCCUGAUCAuacugcgccGCGGCGg -3'
miRNA:   3'- aGCUCGgU----------UGCGGGACUGGU---------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 104994 0.75 0.457664
Target:  5'- aUCGAccgccuggccaaacGCCAGCGCCCcGGCgAGCGGCu -3'
miRNA:   3'- -AGCU--------------CGGUUGCGGGaCUGgUUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.