miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 139741 0.66 0.902111
Target:  5'- ---cGCCAGgGCCucgCUGACCAGCGcACu -3'
miRNA:   3'- agcuCGGUUgCGG---GACUGGUUGC-UGc -5'
5703 3' -55.9 NC_001806.1 + 74580 0.66 0.919922
Target:  5'- cCG-GCgCGuCGCCCUaccCCGACGACGg -3'
miRNA:   3'- aGCuCG-GUuGCGGGAcu-GGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 115114 0.66 0.902111
Target:  5'- uUCGGGU--GCGCCCagGugCcGCGGCGc -3'
miRNA:   3'- -AGCUCGguUGCGGGa-CugGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 112031 0.66 0.914219
Target:  5'- cCGAgGCCAuCGCCCUG-CUcACGGgGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGACuGGuUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 5867 0.66 0.925391
Target:  5'- ---cGCCgGACGCCggGACCAACggGACGg -3'
miRNA:   3'- agcuCGG-UUGCGGgaCUGGUUG--CUGC- -5'
5703 3' -55.9 NC_001806.1 + 1712 0.66 0.914219
Target:  5'- cCGAgGCCGcCGCCCggccGuCCAGCGcCGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGa---CuGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 18096 0.66 0.9148
Target:  5'- cCGGGCCGugGUCCgcaagaaacUGACCcucugaucgccguucGCGGCGa -3'
miRNA:   3'- aGCUCGGUugCGGG---------ACUGGu--------------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23220 0.66 0.902111
Target:  5'- gCG-GCCAGCGCaCCggacGCCGcCGACGc -3'
miRNA:   3'- aGCuCGGUUGCG-GGac--UGGUuGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 97372 0.66 0.912462
Target:  5'- cCGGGCCAcgGCGCC--GACCAcccggaaccugcucACGACc -3'
miRNA:   3'- aGCUCGGU--UGCGGgaCUGGU--------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 12431 0.66 0.908281
Target:  5'- aCGAGCaCcAgGCCCUGcaACgGGCGGCa -3'
miRNA:   3'- aGCUCG-GuUgCGGGAC--UGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 93492 0.66 0.925391
Target:  5'- aCGAgGCCGAgGCCCUagucaGCCAAcuCGGCa -3'
miRNA:   3'- aGCU-CGGUUgCGGGAc----UGGUU--GCUGc -5'
5703 3' -55.9 NC_001806.1 + 104329 0.66 0.919363
Target:  5'- uUCG-GCCAGCGCCUUGuagaagcGCguAUGGCu -3'
miRNA:   3'- -AGCuCGGUUGCGGGAC-------UGguUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 21450 0.66 0.919922
Target:  5'- uUCGAGCCGACGacgaUGACgGggacgaguACGACGn -3'
miRNA:   3'- -AGCUCGGUUGCggg-ACUGgU--------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 72511 0.66 0.914219
Target:  5'- gCGGGCCugggggaGCCCUGcguCGGCGugGg -3'
miRNA:   3'- aGCUCGGuug----CGGGACug-GUUGCugC- -5'
5703 3' -55.9 NC_001806.1 + 5819 0.66 0.930623
Target:  5'- aCGAGCCccgcGCGCCCguUGGCCGucccCGGg- -3'
miRNA:   3'- aGCUCGGu---UGCGGG--ACUGGUu---GCUgc -5'
5703 3' -55.9 NC_001806.1 + 120945 0.66 0.914219
Target:  5'- -aGAGUCGACGaCCUgggGACgGACGuCGa -3'
miRNA:   3'- agCUCGGUUGC-GGGa--CUGgUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 93421 0.66 0.901482
Target:  5'- -gGAGCUGACcgcgcguGCCCUGGagcgcggCAACGGCGa -3'
miRNA:   3'- agCUCGGUUG-------CGGGACUg------GUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 146645 0.66 0.902111
Target:  5'- cCGGGUCGACGCCCccugcuccccgGACC-ACGGg- -3'
miRNA:   3'- aGCUCGGUUGCGGGa----------CUGGuUGCUgc -5'
5703 3' -55.9 NC_001806.1 + 21846 0.66 0.919922
Target:  5'- cCGAGgCcGCGCCCaaGCCccgGGCGGCGg -3'
miRNA:   3'- aGCUCgGuUGCGGGacUGG---UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 49269 0.66 0.914219
Target:  5'- aCGAGCCGcccguGCGCCgucgacggGAaggcccgcgagcCCGACGACGg -3'
miRNA:   3'- aGCUCGGU-----UGCGGga------CU------------GGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.