miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 1606 0.71 0.656704
Target:  5'- aCGGGCCGcagcggcGCGCCCaGGCCccagcgcgcgcaGGCGGCGu -3'
miRNA:   3'- aGCUCGGU-------UGCGGGaCUGG------------UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 1712 0.66 0.914219
Target:  5'- cCGAgGCCGcCGCCCggccGuCCAGCGcCGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGa---CuGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 1904 0.68 0.819159
Target:  5'- cCGGGCCGAacacgcgGCCCgaGGCCAgcaccguGCGGCGc -3'
miRNA:   3'- aGCUCGGUUg------CGGGa-CUGGU-------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 2726 0.67 0.882235
Target:  5'- -gGGGUCGGgGCCCUcggcgGGCCGgcGCGACa -3'
miRNA:   3'- agCUCGGUUgCGGGA-----CUGGU--UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 2953 0.67 0.887054
Target:  5'- cCGGGCCGggacucuugcgcuuGCGCCCcu-CCcGCGGCGc -3'
miRNA:   3'- aGCUCGGU--------------UGCGGGacuGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 3359 0.72 0.606937
Target:  5'- gCGGGCCGG-GCCCcGGCCAGCcccggGACGg -3'
miRNA:   3'- aGCUCGGUUgCGGGaCUGGUUG-----CUGC- -5'
5703 3' -55.9 NC_001806.1 + 3412 0.69 0.766108
Target:  5'- cUCG-GCCAGCGCCUccagGAuCCcGCGGCa -3'
miRNA:   3'- -AGCuCGGUUGCGGGa---CU-GGuUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 3608 0.69 0.773581
Target:  5'- gCGGGCaccgcgcgcuCGCCCgGugCGGCGGCGg -3'
miRNA:   3'- aGCUCGguu-------GCGGGaCugGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 4743 0.79 0.285342
Target:  5'- cCGGGCCGGgGCCCggucGCCGGCGGCGu -3'
miRNA:   3'- aGCUCGGUUgCGGGac--UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 4913 0.67 0.875167
Target:  5'- gCGAGacggcguccCCGGCGUCCUcGCCGGCGuCGg -3'
miRNA:   3'- aGCUC---------GGUUGCGGGAcUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 5819 0.66 0.930623
Target:  5'- aCGAGCCccgcGCGCCCguUGGCCGucccCGGg- -3'
miRNA:   3'- aGCUCGGu---UGCGGG--ACUGGUu---GCUgc -5'
5703 3' -55.9 NC_001806.1 + 5867 0.66 0.925391
Target:  5'- ---cGCCgGACGCCggGACCAACggGACGg -3'
miRNA:   3'- agcuCGG-UUGCGGgaCUGGUUG--CUGC- -5'
5703 3' -55.9 NC_001806.1 + 6135 0.7 0.72575
Target:  5'- gCGA-CCGACGCCCgcagacggcgccGGCCAcgaACGACGg -3'
miRNA:   3'- aGCUcGGUUGCGGGa-----------CUGGU---UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 6591 0.7 0.72673
Target:  5'- uUCGuGCCuucccgcaggaggAACGUCCUcgucgaggcGACCGGCGGCGa -3'
miRNA:   3'- -AGCuCGG-------------UUGCGGGA---------CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 7868 0.76 0.433278
Target:  5'- aCGucGCCccuGugGCCCUGGCgGACGGCGg -3'
miRNA:   3'- aGCu-CGG---UugCGGGACUGgUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 12431 0.66 0.908281
Target:  5'- aCGAGCaCcAgGCCCUGcaACgGGCGGCa -3'
miRNA:   3'- aGCUCG-GuUgCGGGAC--UGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 16514 0.69 0.811401
Target:  5'- cUCGAGCCGcCuCCCUGuCCAugG-CGu -3'
miRNA:   3'- -AGCUCGGUuGcGGGACuGGUugCuGC- -5'
5703 3' -55.9 NC_001806.1 + 17807 0.67 0.882235
Target:  5'- cCGuGCCGACucgguuuuuGCCCgagugGACCGugGCGugGa -3'
miRNA:   3'- aGCuCGGUUG---------CGGGa----CUGGU--UGCugC- -5'
5703 3' -55.9 NC_001806.1 + 18096 0.66 0.9148
Target:  5'- cCGGGCCGugGUCCgcaagaaacUGACCcucugaucgccguucGCGGCGa -3'
miRNA:   3'- aGCUCGGUugCGGG---------ACUGGu--------------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 20018 0.69 0.80263
Target:  5'- gCGAuGCCGACGCCgUccgcuCCGACGGCc -3'
miRNA:   3'- aGCU-CGGUUGCGGgAcu---GGUUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.