miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 20173 0.7 0.727709
Target:  5'- cCGGGCC--CGCCCccggGGCCGGCG-CGg -3'
miRNA:   3'- aGCUCGGuuGCGGGa---CUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 20788 0.67 0.882235
Target:  5'- aUGAGCCcgagGACGCCCcGAUCGuccacacggagcGCGGCu -3'
miRNA:   3'- aGCUCGG----UUGCGGGaCUGGU------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 21159 0.71 0.705997
Target:  5'- aCGGGCCGcCGCCCaccccgagcccaGACC-GCGACGa -3'
miRNA:   3'- aGCUCGGUuGCGGGa-----------CUGGuUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21401 0.67 0.895712
Target:  5'- aCGAucCCGACGCCC-GACCccGCGGCc -3'
miRNA:   3'- aGCUc-GGUUGCGGGaCUGGu-UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 21450 0.66 0.919922
Target:  5'- uUCGAGCCGACGacgaUGACgGggacgaguACGACGn -3'
miRNA:   3'- -AGCUCGGUUGCggg-ACUGgU--------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21486 0.72 0.627246
Target:  5'- aCGcAGCCGACGCC---GCCGGCGACc -3'
miRNA:   3'- aGC-UCGGUUGCGGgacUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 21846 0.66 0.919922
Target:  5'- cCGAGgCcGCGCCCaaGCCccgGGCGGCGg -3'
miRNA:   3'- aGCUCgGuUGCGGGacUGG---UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21896 0.68 0.828455
Target:  5'- gCGGGCCGcaucgaGCGCCgCcgGGCCcgcGCGGCGg -3'
miRNA:   3'- aGCUCGGU------UGCGG-Ga-CUGGu--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21982 0.66 0.925391
Target:  5'- gUCGAGCUgGACGCCgacgcGACCucCGGCGc -3'
miRNA:   3'- -AGCUCGG-UUGCGGga---CUGGuuGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 22211 0.73 0.566596
Target:  5'- gCGAcGCCGcgcagcaguACGCCCUGAUCAcGCGGCu -3'
miRNA:   3'- aGCU-CGGU---------UGCGGGACUGGU-UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 22739 0.67 0.860392
Target:  5'- cCGAcGCCGcccgccACGCCgacGCCGACGACGa -3'
miRNA:   3'- aGCU-CGGU------UGCGGgacUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 22775 0.71 0.698023
Target:  5'- cCGGGCgCcGCGCCCaGGCCGGCcGCGu -3'
miRNA:   3'- aGCUCG-GuUGCGGGaCUGGUUGcUGC- -5'
5703 3' -55.9 NC_001806.1 + 23194 0.74 0.526974
Target:  5'- -aGAGCCuGCGCCCccuGCUGGCGGCGg -3'
miRNA:   3'- agCUCGGuUGCGGGac-UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23220 0.66 0.902111
Target:  5'- gCG-GCCAGCGCaCCggacGCCGcCGACGc -3'
miRNA:   3'- aGCuCGGUUGCG-GGac--UGGUuGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23449 0.69 0.811401
Target:  5'- cCGcccAGCCcgcGGCGCCCcgGGCCGccGCGGCGc -3'
miRNA:   3'- aGC---UCGG---UUGCGGGa-CUGGU--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23527 0.66 0.919922
Target:  5'- -aGGGCCccGACcCCCUGggcgGCUGGCGGCGg -3'
miRNA:   3'- agCUCGG--UUGcGGGAC----UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23728 0.7 0.727709
Target:  5'- cCGGGCCcgcccccgcCGCCCaGGCCGcguGCGGCGg -3'
miRNA:   3'- aGCUCGGuu-------GCGGGaCUGGU---UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23912 0.73 0.586702
Target:  5'- cUCGccgcuGCCgGGCGaggaCCUGGCCGGCGGCGg -3'
miRNA:   3'- -AGCu----CGG-UUGCg---GGACUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23985 0.71 0.667846
Target:  5'- gCGGGCUguccugccugcuGGCgGCCCUGGCCAAcCGGCu -3'
miRNA:   3'- aGCUCGG------------UUG-CGGGACUGGUU-GCUGc -5'
5703 3' -55.9 NC_001806.1 + 24163 0.72 0.617086
Target:  5'- ---cGCCAGCGCCggcGACCGGCGGCu -3'
miRNA:   3'- agcuCGGUUGCGGga-CUGGUUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.