miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 132890 0.66 0.930623
Target:  5'- uUCGcGCCcagcuccuGGCgGCCCUGGCCGACcuCGg -3'
miRNA:   3'- -AGCuCGG--------UUG-CGGGACUGGUUGcuGC- -5'
5703 3' -55.9 NC_001806.1 + 1712 0.66 0.914219
Target:  5'- cCGAgGCCGcCGCCCggccGuCCAGCGcCGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGa---CuGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 97372 0.66 0.912462
Target:  5'- cCGGGCCAcgGCGCC--GACCAcccggaaccugcucACGACc -3'
miRNA:   3'- aGCUCGGU--UGCGGgaCUGGU--------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 72511 0.66 0.914219
Target:  5'- gCGGGCCugggggaGCCCUGcguCGGCGugGg -3'
miRNA:   3'- aGCUCGGuug----CGGGACug-GUUGCugC- -5'
5703 3' -55.9 NC_001806.1 + 12431 0.66 0.908281
Target:  5'- aCGAGCaCcAgGCCCUGcaACgGGCGGCa -3'
miRNA:   3'- aGCUCG-GuUgCGGGAC--UGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 112031 0.66 0.914219
Target:  5'- cCGAgGCCAuCGCCCUG-CUcACGGgGg -3'
miRNA:   3'- aGCU-CGGUuGCGGGACuGGuUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 18096 0.66 0.9148
Target:  5'- cCGGGCCGugGUCCgcaagaaacUGACCcucugaucgccguucGCGGCGa -3'
miRNA:   3'- aGCUCGGUugCGGG---------ACUGGu--------------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 49269 0.66 0.914219
Target:  5'- aCGAGCCGcccguGCGCCgucgacggGAaggcccgcgagcCCGACGACGg -3'
miRNA:   3'- aGCUCGGU-----UGCGGga------CU------------GGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 100778 0.66 0.930623
Target:  5'- cUCGgcGGCCAgucgccGCGCCCcucgcgagacGCCGGCGACa -3'
miRNA:   3'- -AGC--UCGGU------UGCGGGac--------UGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 69430 0.66 0.925391
Target:  5'- cCGcGCgGACGCCCaccGGCCAcggacuCGGCGa -3'
miRNA:   3'- aGCuCGgUUGCGGGa--CUGGUu-----GCUGC- -5'
5703 3' -55.9 NC_001806.1 + 85900 0.67 0.882235
Target:  5'- uUCaGGgCGACGCCgUGGgCAAUGGCGu -3'
miRNA:   3'- -AGcUCgGUUGCGGgACUgGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 131446 0.67 0.895712
Target:  5'- uUCGGuaCGugguCGUCCgcgGACCGGCGGCGc -3'
miRNA:   3'- -AGCUcgGUu---GCGGGa--CUGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 70683 0.67 0.882235
Target:  5'- aCGAGgaCAACGUgCUGGCCGugGucCGg -3'
miRNA:   3'- aGCUCg-GUUGCGgGACUGGUugCu-GC- -5'
5703 3' -55.9 NC_001806.1 + 32993 0.67 0.895712
Target:  5'- cCGGGCCGGgcCGCCaCgggGGCCGGCcguuGGCGg -3'
miRNA:   3'- aGCUCGGUU--GCGG-Ga--CUGGUUG----CUGC- -5'
5703 3' -55.9 NC_001806.1 + 17807 0.67 0.882235
Target:  5'- cCGuGCCGACucgguuuuuGCCCgagugGACCGugGCGugGa -3'
miRNA:   3'- aGCuCGGUUG---------CGGGa----CUGGU--UGCugC- -5'
5703 3' -55.9 NC_001806.1 + 79092 0.67 0.875167
Target:  5'- cUCGccGCCAGCGCC---ACCGACGAgGa -3'
miRNA:   3'- -AGCu-CGGUUGCGGgacUGGUUGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 21401 0.67 0.895712
Target:  5'- aCGAucCCGACGCCC-GACCccGCGGCc -3'
miRNA:   3'- aGCUc-GGUUGCGGGaCUGGu-UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 104737 0.67 0.895712
Target:  5'- aUGGGCaugccuuAUGCCgUGACCGACGcCGu -3'
miRNA:   3'- aGCUCGgu-----UGCGGgACUGGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 124965 0.67 0.882235
Target:  5'- cCGAGaCCAacacccACGgCCUGGCguAUGACGu -3'
miRNA:   3'- aGCUC-GGU------UGCgGGACUGguUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 89751 0.67 0.875167
Target:  5'- gCG-GCC-ACGCCCaccGGCUGAUGACGc -3'
miRNA:   3'- aGCuCGGuUGCGGGa--CUGGUUGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.