miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 151528 0.69 0.811401
Target:  5'- gUUGGGaCGGCGCCCgugGGCCcgggcggccgggGGCGGCGg -3'
miRNA:   3'- -AGCUCgGUUGCGGGa--CUGG------------UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 151468 0.68 0.855798
Target:  5'- gCGGGC--GCGCuCCUGACCGcggguuccgaguuggGCGugGa -3'
miRNA:   3'- aGCUCGguUGCG-GGACUGGU---------------UGCugC- -5'
5703 3' -55.9 NC_001806.1 + 151283 0.67 0.889085
Target:  5'- -gGGGCCGGgGCCgggGGgCGGCGGCGg -3'
miRNA:   3'- agCUCGGUUgCGGga-CUgGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 150989 0.71 0.677944
Target:  5'- aCGAGCCGcgGCGCgCCaGGCgGGCGGCc -3'
miRNA:   3'- aGCUCGGU--UGCG-GGaCUGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 150879 0.66 0.928558
Target:  5'- gCGGGCCAGgGCCCgggcacgGGCCucgggccccaggcACGGCc -3'
miRNA:   3'- aGCUCGGUUgCGGGa------CUGGu------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 146645 0.66 0.902111
Target:  5'- cCGGGUCGACGCCCccugcuccccgGACC-ACGGg- -3'
miRNA:   3'- aGCUCGGUUGCGGGa----------CUGGuUGCUgc -5'
5703 3' -55.9 NC_001806.1 + 142028 0.7 0.717883
Target:  5'- gCGAggagcGCCGcCgGCCCUGACgAGCGACa -3'
miRNA:   3'- aGCU-----CGGUuG-CGGGACUGgUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 141423 0.68 0.852696
Target:  5'- cCGGGgCGGCGCgC-GGCCAAcCGGCGg -3'
miRNA:   3'- aGCUCgGUUGCGgGaCUGGUU-GCUGC- -5'
5703 3' -55.9 NC_001806.1 + 140821 0.74 0.507549
Target:  5'- gUGAGCUggcGACGCCCUaauucgucGAUCGACGACa -3'
miRNA:   3'- aGCUCGG---UUGCGGGA--------CUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 139741 0.66 0.902111
Target:  5'- ---cGCCAGgGCCucgCUGACCAGCGcACu -3'
miRNA:   3'- agcuCGGUUgCGG---GACUGGUUGC-UGc -5'
5703 3' -55.9 NC_001806.1 + 137613 0.69 0.77451
Target:  5'- aCGAGUUucGCGCCCUGGCCGcccuggaACGGa- -3'
miRNA:   3'- aGCUCGGu-UGCGGGACUGGU-------UGCUgc -5'
5703 3' -55.9 NC_001806.1 + 137570 0.67 0.882235
Target:  5'- aCGaAGC--GCGCCCUGGCCGccuccggggGCGAgGa -3'
miRNA:   3'- aGC-UCGguUGCGGGACUGGU---------UGCUgC- -5'
5703 3' -55.9 NC_001806.1 + 136367 0.67 0.882235
Target:  5'- -gGGGCCGGCGCgCUccgcGGCCuccGCGACc -3'
miRNA:   3'- agCUCGGUUGCGgGA----CUGGu--UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 136269 0.69 0.80263
Target:  5'- aCGAGCCAGuCGCCCcGGCgGugGuuGu -3'
miRNA:   3'- aGCUCGGUU-GCGGGaCUGgUugCugC- -5'
5703 3' -55.9 NC_001806.1 + 135001 0.69 0.766108
Target:  5'- cCGAuGCCccCGCCCUGGuCCGGCG-CGc -3'
miRNA:   3'- aGCU-CGGuuGCGGGACU-GGUUGCuGC- -5'
5703 3' -55.9 NC_001806.1 + 134955 0.66 0.93011
Target:  5'- gCG-GCCGAC-CCCUcaucgucGGCCGucGCGGCGg -3'
miRNA:   3'- aGCuCGGUUGcGGGA-------CUGGU--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 133270 0.67 0.889085
Target:  5'- -aGGGCCAACGCCgUccGGCUG-CGGCa -3'
miRNA:   3'- agCUCGGUUGCGGgA--CUGGUuGCUGc -5'
5703 3' -55.9 NC_001806.1 + 133222 0.68 0.828455
Target:  5'- aUCGAG--GACGCCCggcgGGCCAucgaGACGg -3'
miRNA:   3'- -AGCUCggUUGCGGGa---CUGGUug--CUGC- -5'
5703 3' -55.9 NC_001806.1 + 132890 0.66 0.930623
Target:  5'- uUCGcGCCcagcuccuGGCgGCCCUGGCCGACcuCGg -3'
miRNA:   3'- -AGCuCGG--------UUG-CGGGACUGGUUGcuGC- -5'
5703 3' -55.9 NC_001806.1 + 131446 0.67 0.895712
Target:  5'- uUCGGuaCGugguCGUCCgcgGACCGGCGGCGc -3'
miRNA:   3'- -AGCUcgGUu---GCGGGa--CUGGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.