miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 5' -63.5 NC_001806.1 + 89306 0.65 0.573915
Target:  5'- ----aCGCCGCCCUGGcCGCcgacuuuCCUCCg -3'
miRNA:   3'- uugcaGCGGCGGGACUcGCG-------GGAGGa -5'
5703 5' -63.5 NC_001806.1 + 1281 0.66 0.565176
Target:  5'- gAACG-CGCCGCCgUcGucuucgucccaGGCGCCUUCCc -3'
miRNA:   3'- -UUGCaGCGGCGGgA-C-----------UCGCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 148743 0.66 0.559369
Target:  5'- cACGUCGCCcucgucgcuccccccGUCCUcucgaggggGGGCGCCC-CCg -3'
miRNA:   3'- uUGCAGCGG---------------CGGGA---------CUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 115471 0.66 0.555508
Target:  5'- aAACaUCGCUGCCUgGAGCGCCUgaUCg- -3'
miRNA:   3'- -UUGcAGCGGCGGGaCUCGCGGG--AGga -5'
5703 5' -63.5 NC_001806.1 + 145972 0.66 0.555508
Target:  5'- -gUGUgGCCGaCCCccuuuUGGGCGCCCcgUCCc -3'
miRNA:   3'- uuGCAgCGGC-GGG-----ACUCGCGGG--AGGa -5'
5703 5' -63.5 NC_001806.1 + 4388 0.66 0.545888
Target:  5'- -uCGcCGCCGCCCggggcuUGGGCGCggCCUCg- -3'
miRNA:   3'- uuGCaGCGGCGGG------ACUCGCG--GGAGga -5'
5703 5' -63.5 NC_001806.1 + 78373 0.66 0.540141
Target:  5'- --aGUC-CCGCCCaggcgcuggcggcggUGAGCGUCCUCg- -3'
miRNA:   3'- uugCAGcGGCGGG---------------ACUCGCGGGAGga -5'
5703 5' -63.5 NC_001806.1 + 45381 0.66 0.536322
Target:  5'- aAAUGUCuGCCccggggGCCCUG-GUGCCCUUUUa -3'
miRNA:   3'- -UUGCAG-CGG------CGGGACuCGCGGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 132066 0.66 0.535368
Target:  5'- gAGCGUcguggggcccgccCGCCGCCCcucGCGCCgcuCUCCUg -3'
miRNA:   3'- -UUGCA-------------GCGGCGGGacuCGCGG---GAGGA- -5'
5703 5' -63.5 NC_001806.1 + 73565 0.66 0.526815
Target:  5'- cGACGUgGCCGCCCaucuGC-CCCUCg- -3'
miRNA:   3'- -UUGCAgCGGCGGGacu-CGcGGGAGga -5'
5703 5' -63.5 NC_001806.1 + 43797 0.67 0.507997
Target:  5'- uGGCGcCuGCCGCCCgaaacgGcGaCGCCCUCCc -3'
miRNA:   3'- -UUGCaG-CGGCGGGa-----CuC-GCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 57762 0.67 0.504268
Target:  5'- gGACGggcCGCCGuCCCguccgccgcaucgGAGuCGUCCUCCg -3'
miRNA:   3'- -UUGCa--GCGGC-GGGa------------CUC-GCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 148495 0.67 0.480325
Target:  5'- cACGgccgUGcCCGCCCUGA-CGgCCUCCUc -3'
miRNA:   3'- uUGCa---GC-GGCGGGACUcGCgGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 130993 0.67 0.480325
Target:  5'- cGCGUCGCCgacGCCCUaAGCGgCUgUCCc -3'
miRNA:   3'- uUGCAGCGG---CGGGAcUCGC-GGgAGGa -5'
5703 5' -63.5 NC_001806.1 + 92495 0.67 0.471264
Target:  5'- --gGUCGCCaGCCUccaGAGCGCCUaCCa -3'
miRNA:   3'- uugCAGCGG-CGGGa--CUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 150260 0.67 0.462291
Target:  5'- uGCGUCGgUGCCCcgGGGCuucccGCCUUCCc -3'
miRNA:   3'- uUGCAGCgGCGGGa-CUCG-----CGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 74918 0.67 0.462291
Target:  5'- -cCGagGCCGUUCgggGGGCGCCC-CCUg -3'
miRNA:   3'- uuGCagCGGCGGGa--CUCGCGGGaGGA- -5'
5703 5' -63.5 NC_001806.1 + 60029 0.67 0.462291
Target:  5'- cGCGcUGCCGUCCgccGCGCCCUCg- -3'
miRNA:   3'- uUGCaGCGGCGGGacuCGCGGGAGga -5'
5703 5' -63.5 NC_001806.1 + 57880 0.68 0.453409
Target:  5'- cGCGccauccUCGCC-CCCcGAGCGCCC-CCg -3'
miRNA:   3'- uUGC------AGCGGcGGGaCUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 134838 0.68 0.453409
Target:  5'- uGGCgGUCGCCGaCCUG-GCGCaCCUCg- -3'
miRNA:   3'- -UUG-CAGCGGCgGGACuCGCG-GGAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.