miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 5' -63.5 NC_001806.1 + 1281 0.66 0.565176
Target:  5'- gAACG-CGCCGCCgUcGucuucgucccaGGCGCCUUCCc -3'
miRNA:   3'- -UUGCaGCGGCGGgA-C-----------UCGCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 4046 0.69 0.36856
Target:  5'- cGGCGUCGCCcagcucgggcGCCCacacggccgccgGGGCGCCCgaggCCUc -3'
miRNA:   3'- -UUGCAGCGG----------CGGGa-----------CUCGCGGGa---GGA- -5'
5703 5' -63.5 NC_001806.1 + 4102 0.71 0.266106
Target:  5'- cGGCGUCGCgccuccucCGCCUcGGGCGCCCcCCa -3'
miRNA:   3'- -UUGCAGCG--------GCGGGaCUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 4388 0.66 0.545888
Target:  5'- -uCGcCGCCGCCCggggcuUGGGCGCggCCUCg- -3'
miRNA:   3'- uuGCaGCGGCGGG------ACUCGCG--GGAGga -5'
5703 5' -63.5 NC_001806.1 + 4940 0.74 0.173964
Target:  5'- cGGCGUCGgUGCCCgccgcGGGgGCCCUCCc -3'
miRNA:   3'- -UUGCAGCgGCGGGa----CUCgCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 15226 0.68 0.418841
Target:  5'- aGAUGuUCGCCGUCCccGGCcCCCUCCUc -3'
miRNA:   3'- -UUGC-AGCGGCGGGacUCGcGGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 22671 0.72 0.251844
Target:  5'- cGCGgggauccUCGCCGCCCUGGggcggcuguccgccGCGCCCgCCUc -3'
miRNA:   3'- uUGC-------AGCGGCGGGACU--------------CGCGGGaGGA- -5'
5703 5' -63.5 NC_001806.1 + 23102 0.68 0.453409
Target:  5'- --gGUCGCCgggGCCCUGGGC-CCCgcgcugCCg -3'
miRNA:   3'- uugCAGCGG---CGGGACUCGcGGGa-----GGa -5'
5703 5' -63.5 NC_001806.1 + 32682 0.68 0.402168
Target:  5'- uGGCGUgGCCGaCCUUagccucugGGGCGCCC-CCUg -3'
miRNA:   3'- -UUGCAgCGGC-GGGA--------CUCGCGGGaGGA- -5'
5703 5' -63.5 NC_001806.1 + 41692 0.7 0.339855
Target:  5'- gGGCGgcgUGCCGCCCgccGUGUCCUCCc -3'
miRNA:   3'- -UUGCa--GCGGCGGGacuCGCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 43797 0.67 0.507997
Target:  5'- uGGCGcCuGCCGCCCgaaacgGcGaCGCCCUCCc -3'
miRNA:   3'- -UUGCaG-CGGCGGGa-----CuC-GCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 45381 0.66 0.536322
Target:  5'- aAAUGUCuGCCccggggGCCCUG-GUGCCCUUUUa -3'
miRNA:   3'- -UUGCAG-CGG------CGGGACuCGCGGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 51818 0.69 0.362381
Target:  5'- -cCGUgGCCGgCCUGcGCgacGCCCUCCa -3'
miRNA:   3'- uuGCAgCGGCgGGACuCG---CGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 53350 1.05 0.001034
Target:  5'- cAACGUCGCCGCCCUGAGCGCCCUCCUg -3'
miRNA:   3'- -UUGCAGCGGCGGGACUCGCGGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 56247 0.71 0.297907
Target:  5'- aAGCGUCGCCGCCaaccGGGC-CCCgUCCc -3'
miRNA:   3'- -UUGCAGCGGCGGga--CUCGcGGG-AGGa -5'
5703 5' -63.5 NC_001806.1 + 57345 0.68 0.453409
Target:  5'- -uCGUCGacCCGuCCCUGGcCGUCCUCCg -3'
miRNA:   3'- uuGCAGC--GGC-GGGACUcGCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 57762 0.67 0.504268
Target:  5'- gGACGggcCGCCGuCCCguccgccgcaucgGAGuCGUCCUCCg -3'
miRNA:   3'- -UUGCa--GCGGC-GGGa------------CUC-GCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 57880 0.68 0.453409
Target:  5'- cGCGccauccUCGCC-CCCcGAGCGCCC-CCg -3'
miRNA:   3'- uUGC------AGCGGcGGGaCUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 60029 0.67 0.462291
Target:  5'- cGCGcUGCCGUCCgccGCGCCCUCg- -3'
miRNA:   3'- uUGCaGCGGCGGGacuCGCGGGAGga -5'
5703 5' -63.5 NC_001806.1 + 73565 0.66 0.526815
Target:  5'- cGACGUgGCCGCCCaucuGC-CCCUCg- -3'
miRNA:   3'- -UUGCAgCGGCGGGacu-CGcGGGAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.