Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 150260 | 0.67 | 0.462291 |
Target: 5'- uGCGUCGgUGCCCcgGGGCuucccGCCUUCCc -3' miRNA: 3'- uUGCAGCgGCGGGa-CUCG-----CGGGAGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 148743 | 0.66 | 0.559369 |
Target: 5'- cACGUCGCCcucgucgcuccccccGUCCUcucgaggggGGGCGCCC-CCg -3' miRNA: 3'- uUGCAGCGG---------------CGGGA---------CUCGCGGGaGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 148495 | 0.67 | 0.480325 |
Target: 5'- cACGgccgUGcCCGCCCUGA-CGgCCUCCUc -3' miRNA: 3'- uUGCa---GC-GGCGGGACUcGCgGGAGGA- -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 147356 | 0.74 | 0.187057 |
Target: 5'- uGCGUCGCCGCCCUcuuGGC-CCCUgCCg -3' miRNA: 3'- uUGCAGCGGCGGGAc--UCGcGGGA-GGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 145972 | 0.66 | 0.555508 |
Target: 5'- -gUGUgGCCGaCCCccuuuUGGGCGCCCcgUCCc -3' miRNA: 3'- uuGCAgCGGC-GGG-----ACUCGCGGG--AGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 137736 | 0.68 | 0.427334 |
Target: 5'- cGACGagGCCGggcuCCUUGGGCGUcaCCUCCUc -3' miRNA: 3'- -UUGCagCGGC----GGGACUCGCG--GGAGGA- -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 134838 | 0.68 | 0.453409 |
Target: 5'- uGGCgGUCGCCGaCCUG-GCGCaCCUCg- -3' miRNA: 3'- -UUG-CAGCGGCgGGACuCGCG-GGAGga -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 132066 | 0.66 | 0.535368 |
Target: 5'- gAGCGUcguggggcccgccCGCCGCCCcucGCGCCgcuCUCCUg -3' miRNA: 3'- -UUGCA-------------GCGGCGGGacuCGCGG---GAGGA- -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 131963 | 0.68 | 0.44462 |
Target: 5'- uGCGUCcugGCgGCCCUgGAGCGCCagaCCg -3' miRNA: 3'- uUGCAG---CGgCGGGA-CUCGCGGga-GGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 130993 | 0.67 | 0.480325 |
Target: 5'- cGCGUCGCCgacGCCCUaAGCGgCUgUCCc -3' miRNA: 3'- uUGCAGCGG---CGGGAcUCGC-GGgAGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 122999 | 0.68 | 0.427334 |
Target: 5'- gGGCaUCGCCGCCCauggUGAG-GCCCgCCg -3' miRNA: 3'- -UUGcAGCGGCGGG----ACUCgCGGGaGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 115471 | 0.66 | 0.555508 |
Target: 5'- aAACaUCGCUGCCUgGAGCGCCUgaUCg- -3' miRNA: 3'- -UUGcAGCGGCGGGaCUCGCGGG--AGga -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 96532 | 0.68 | 0.418841 |
Target: 5'- cGGCGcCGcCCGCCCcuGGCGCCCcCCc -3' miRNA: 3'- -UUGCaGC-GGCGGGacUCGCGGGaGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 94758 | 0.68 | 0.410452 |
Target: 5'- gGACGcCGaCCGCgCgcGGGCGCUCUCCg -3' miRNA: 3'- -UUGCaGC-GGCGgGa-CUCGCGGGAGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 92495 | 0.67 | 0.471264 |
Target: 5'- --gGUCGCCaGCCUccaGAGCGCCUaCCa -3' miRNA: 3'- uugCAGCGG-CGGGa--CUCGCGGGaGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 89306 | 0.65 | 0.573915 |
Target: 5'- ----aCGCCGCCCUGGcCGCcgacuuuCCUCCg -3' miRNA: 3'- uugcaGCGGCGGGACUcGCG-------GGAGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 84990 | 0.72 | 0.254177 |
Target: 5'- ---uUCGCCGCCCUcgcccAGaCGCCCUCCg -3' miRNA: 3'- uugcAGCGGCGGGAc----UC-GCGGGAGGa -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 83217 | 0.68 | 0.44462 |
Target: 5'- gGACGUCGCCGCCgacgUGGucacCGCCC-CCUc -3' miRNA: 3'- -UUGCAGCGGCGGg---ACUc---GCGGGaGGA- -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 78373 | 0.66 | 0.540141 |
Target: 5'- --aGUC-CCGCCCaggcgcuggcggcggUGAGCGUCCUCg- -3' miRNA: 3'- uugCAGcGGCGGG---------------ACUCGCGGGAGga -5' |
|||||||
5703 | 5' | -63.5 | NC_001806.1 | + | 77162 | 0.7 | 0.318362 |
Target: 5'- cGCGUggcccaacaCGCCGaCCUGAGCGCCCggCUg -3' miRNA: 3'- uUGCA---------GCGGCgGGACUCGCGGGagGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home