miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 5' -63.5 NC_001806.1 + 74918 0.67 0.462291
Target:  5'- -cCGagGCCGUUCgggGGGCGCCC-CCUg -3'
miRNA:   3'- uuGCagCGGCGGGa--CUCGCGGGaGGA- -5'
5703 5' -63.5 NC_001806.1 + 77162 0.7 0.318362
Target:  5'- cGCGUggcccaacaCGCCGaCCUGAGCGCCCggCUg -3'
miRNA:   3'- uUGCA---------GCGGCgGGACUCGCGGGagGA- -5'
5703 5' -63.5 NC_001806.1 + 78373 0.66 0.540141
Target:  5'- --aGUC-CCGCCCaggcgcuggcggcggUGAGCGUCCUCg- -3'
miRNA:   3'- uugCAGcGGCGGG---------------ACUCGCGGGAGga -5'
5703 5' -63.5 NC_001806.1 + 83217 0.68 0.44462
Target:  5'- gGACGUCGCCGCCgacgUGGucacCGCCC-CCUc -3'
miRNA:   3'- -UUGCAGCGGCGGg---ACUc---GCGGGaGGA- -5'
5703 5' -63.5 NC_001806.1 + 84990 0.72 0.254177
Target:  5'- ---uUCGCCGCCCUcgcccAGaCGCCCUCCg -3'
miRNA:   3'- uugcAGCGGCGGGAc----UC-GCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 89306 0.65 0.573915
Target:  5'- ----aCGCCGCCCUGGcCGCcgacuuuCCUCCg -3'
miRNA:   3'- uugcaGCGGCGGGACUcGCG-------GGAGGa -5'
5703 5' -63.5 NC_001806.1 + 92495 0.67 0.471264
Target:  5'- --gGUCGCCaGCCUccaGAGCGCCUaCCa -3'
miRNA:   3'- uugCAGCGG-CGGGa--CUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 94758 0.68 0.410452
Target:  5'- gGACGcCGaCCGCgCgcGGGCGCUCUCCg -3'
miRNA:   3'- -UUGCaGC-GGCGgGa-CUCGCGGGAGGa -5'
5703 5' -63.5 NC_001806.1 + 96532 0.68 0.418841
Target:  5'- cGGCGcCGcCCGCCCcuGGCGCCCcCCc -3'
miRNA:   3'- -UUGCaGC-GGCGGGacUCGCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 115471 0.66 0.555508
Target:  5'- aAACaUCGCUGCCUgGAGCGCCUgaUCg- -3'
miRNA:   3'- -UUGcAGCGGCGGGaCUCGCGGG--AGga -5'
5703 5' -63.5 NC_001806.1 + 122999 0.68 0.427334
Target:  5'- gGGCaUCGCCGCCCauggUGAG-GCCCgCCg -3'
miRNA:   3'- -UUGcAGCGGCGGG----ACUCgCGGGaGGa -5'
5703 5' -63.5 NC_001806.1 + 130993 0.67 0.480325
Target:  5'- cGCGUCGCCgacGCCCUaAGCGgCUgUCCc -3'
miRNA:   3'- uUGCAGCGG---CGGGAcUCGC-GGgAGGa -5'
5703 5' -63.5 NC_001806.1 + 131963 0.68 0.44462
Target:  5'- uGCGUCcugGCgGCCCUgGAGCGCCagaCCg -3'
miRNA:   3'- uUGCAG---CGgCGGGA-CUCGCGGga-GGa -5'
5703 5' -63.5 NC_001806.1 + 132066 0.66 0.535368
Target:  5'- gAGCGUcguggggcccgccCGCCGCCCcucGCGCCgcuCUCCUg -3'
miRNA:   3'- -UUGCA-------------GCGGCGGGacuCGCGG---GAGGA- -5'
5703 5' -63.5 NC_001806.1 + 134838 0.68 0.453409
Target:  5'- uGGCgGUCGCCGaCCUG-GCGCaCCUCg- -3'
miRNA:   3'- -UUG-CAGCGGCgGGACuCGCG-GGAGga -5'
5703 5' -63.5 NC_001806.1 + 137736 0.68 0.427334
Target:  5'- cGACGagGCCGggcuCCUUGGGCGUcaCCUCCUc -3'
miRNA:   3'- -UUGCagCGGC----GGGACUCGCG--GGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 145972 0.66 0.555508
Target:  5'- -gUGUgGCCGaCCCccuuuUGGGCGCCCcgUCCc -3'
miRNA:   3'- uuGCAgCGGC-GGG-----ACUCGCGGG--AGGa -5'
5703 5' -63.5 NC_001806.1 + 147356 0.74 0.187057
Target:  5'- uGCGUCGCCGCCCUcuuGGC-CCCUgCCg -3'
miRNA:   3'- uUGCAGCGGCGGGAc--UCGcGGGA-GGa -5'
5703 5' -63.5 NC_001806.1 + 148495 0.67 0.480325
Target:  5'- cACGgccgUGcCCGCCCUGA-CGgCCUCCUc -3'
miRNA:   3'- uUGCa---GC-GGCGGGACUcGCgGGAGGA- -5'
5703 5' -63.5 NC_001806.1 + 148743 0.66 0.559369
Target:  5'- cACGUCGCCcucgucgcuccccccGUCCUcucgaggggGGGCGCCC-CCg -3'
miRNA:   3'- uUGCAGCGG---------------CGGGA---------CUCGCGGGaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.