miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 30578 0.66 0.35989
Target:  5'- -gUCCCCCCC---UCGCGCCggcagGGGCCa -3'
miRNA:   3'- aaAGGGGGGGcccGGCGUGG-----CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 5923 0.66 0.357687
Target:  5'- --gCCCCCCCauuggccggcgggcGGGaCCGCcccaaggggGCgGGGCCg -3'
miRNA:   3'- aaaGGGGGGG--------------CCC-GGCG---------UGgCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 24806 0.66 0.352582
Target:  5'- --gCCCugCCgCCGGcGCCGCccgggauucGCUGGGCCUc -3'
miRNA:   3'- aaaGGG--GG-GGCC-CGGCG---------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144570 0.66 0.351857
Target:  5'- cUUUCCgggcgcgUCCgGGuGCCGCGgcucuCCGGGCCCc -3'
miRNA:   3'- aAAGGG-------GGGgCC-CGGCGU-----GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 132995 0.66 0.35041
Target:  5'- -cUCCCucagagCCCUGGGCCggggccgucuuggaGCGCCuGGUCCc -3'
miRNA:   3'- aaAGGG------GGGGCCCGG--------------CGUGGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 132503 0.67 0.345379
Target:  5'- --gCCgCCCCCGGGgcccuggcccCCGUcuuuGCCuuucugGGGCCCg -3'
miRNA:   3'- aaaGG-GGGGGCCC----------GGCG----UGG------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 30845 0.67 0.345379
Target:  5'- --gCCCCCgcgcugcuuCUGGGCCGCGg-GGGCCg -3'
miRNA:   3'- aaaGGGGG---------GGCCCGGCGUggCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 99196 0.67 0.345379
Target:  5'- --aCUCCCCCGGG-UGU-CCGcGGCCUg -3'
miRNA:   3'- aaaGGGGGGGCCCgGCGuGGC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147152 0.67 0.345379
Target:  5'- -cUCCCUCCCaGG--GCACCGacGGCCCc -3'
miRNA:   3'- aaAGGGGGGGcCCggCGUGGC--CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 20181 0.67 0.345379
Target:  5'- ---gCCCCCgGGGCCGgCGCggaguCGGGCa- -3'
miRNA:   3'- aaagGGGGGgCCCGGC-GUG-----GCCCGgg -5'
5704 5' -68.1 NC_001806.1 + 46176 0.67 0.338283
Target:  5'- ---gCCCCCCGGGCCcC-CCGaaCCCa -3'
miRNA:   3'- aaagGGGGGGCCCGGcGuGGCccGGG- -5'
5704 5' -68.1 NC_001806.1 + 21558 0.67 0.338283
Target:  5'- -aUCCggaCCCCaCGGaccgccugucGCCGCGCCcgccGGCCCa -3'
miRNA:   3'- aaAGG---GGGG-GCC----------CGGCGUGGc---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 55880 0.67 0.338283
Target:  5'- --aCCCgCCCCGGGCCauGC-CCGacGCCUc -3'
miRNA:   3'- aaaGGG-GGGGCCCGG--CGuGGCc-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 114543 0.67 0.337579
Target:  5'- aUUUCCCCCCGGcccugcgcgaccuGUCGCGgCaGGUCCc -3'
miRNA:   3'- aAAGGGGGGGCC-------------CGGCGUgGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 148822 0.67 0.331293
Target:  5'- -cUCCCCCCCGaGaCCGCccccccauccacGCCcugcGGCCCc -3'
miRNA:   3'- aaAGGGGGGGCcC-GGCG------------UGGc---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 3653 0.67 0.331293
Target:  5'- --aCCCCCUCGucauCUGCGCCGGcGCCg -3'
miRNA:   3'- aaaGGGGGGGCcc--GGCGUGGCC-CGGg -5'
5704 5' -68.1 NC_001806.1 + 6987 0.67 0.331293
Target:  5'- gUUCCCCCCCGuGGCUcucgagaugaGCcagacccaACCcccGGCCCc -3'
miRNA:   3'- aAAGGGGGGGC-CCGG----------CG--------UGGc--CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 95319 0.67 0.331293
Target:  5'- --gCgCCCaaGGGCgGCG-CGGGCCCc -3'
miRNA:   3'- aaaGgGGGggCCCGgCGUgGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144956 0.67 0.331293
Target:  5'- --gCCggCCCCCGuGGCgGCccgGCCcgGGGCCCc -3'
miRNA:   3'- aaaGG--GGGGGC-CCGgCG---UGG--CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 15850 0.67 0.331293
Target:  5'- --gCCCCUuuUgGGGCCGCGggGGGCCg -3'
miRNA:   3'- aaaGGGGG--GgCCCGGCGUggCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.