miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 32938 0.66 0.374822
Target:  5'- ---aUgCgCCGGGCCGUugUGgGGCCCc -3'
miRNA:   3'- aaagGgGgGGCCCGGCGugGC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 5061 0.66 0.374822
Target:  5'- ---gCCCCCCGcucGUCGCGguCUGGGCUCg -3'
miRNA:   3'- aaagGGGGGGCc--CGGCGU--GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 136948 0.66 0.374822
Target:  5'- --gUCCCCCCGcGCaCGCGUaguggGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCcCG-GCGUGg----CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 81823 0.66 0.374822
Target:  5'- --aCCCCgCaGGGCCuGUGCCacgggcgggaGGGCCCu -3'
miRNA:   3'- aaaGGGGgGgCCCGG-CGUGG----------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 129591 0.66 0.374822
Target:  5'- --gCCaUgCCCGGGUuuucggCGCGCCGGuGCCUg -3'
miRNA:   3'- aaaGG-GgGGGCCCG------GCGUGGCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 120886 0.66 0.374822
Target:  5'- -gUCCCCCggggaccuugcCCcGGCCGgAuucCCGGGCCg -3'
miRNA:   3'- aaAGGGGG-----------GGcCCGGCgU---GGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 99990 0.66 0.372556
Target:  5'- --gCCUCCCCGGGguaguacggguaguCCGCGuCCGGuucGUCCu -3'
miRNA:   3'- aaaGGGGGGGCCC--------------GGCGU-GGCC---CGGG- -5'
5704 5' -68.1 NC_001806.1 + 1381 0.66 0.367304
Target:  5'- --gCCCCCgCCgccgccagcacGGuGCCGCugCGG-CCCg -3'
miRNA:   3'- aaaGGGGG-GG-----------CC-CGGCGugGCCcGGG- -5'
5704 5' -68.1 NC_001806.1 + 52389 0.66 0.367304
Target:  5'- --gCCCCCCUGuuccccacgauGaCCGCccccaGCUGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGC-----------CcGGCG-----UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 23821 0.66 0.367304
Target:  5'- --gCCCCCUgcgcgccuCGGGCCcgcuGCGCCGcauggcGGCCUg -3'
miRNA:   3'- aaaGGGGGG--------GCCCGG----CGUGGC------CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 135219 0.66 0.367304
Target:  5'- -cUCCuCCCCCaGGauGaCAUCGGaGCCCg -3'
miRNA:   3'- aaAGG-GGGGGcCCggC-GUGGCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 113662 0.66 0.367304
Target:  5'- --aCCUUCCCGaggagugcauGGCCGUguACCGGGaCCUg -3'
miRNA:   3'- aaaGGGGGGGC----------CCGGCG--UGGCCC-GGG- -5'
5704 5' -68.1 NC_001806.1 + 21512 0.66 0.367304
Target:  5'- --gCCCCggCCCgGGGCCGCgaaCGGGaggcCCCg -3'
miRNA:   3'- aaaGGGG--GGG-CCCGGCGug-GCCC----GGG- -5'
5704 5' -68.1 NC_001806.1 + 46103 0.66 0.367304
Target:  5'- -gUCCggCCCgGGGCCuGCGCgGGcGCCUc -3'
miRNA:   3'- aaAGGg-GGGgCCCGG-CGUGgCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 83314 0.66 0.367304
Target:  5'- --cCCCCggauCCCuguggggagGGGCUuuugGaCACCGGGCCCu -3'
miRNA:   3'- aaaGGGG----GGG---------CCCGG----C-GUGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 65220 0.66 0.367304
Target:  5'- -cUCCCCCCCGaauaCCGCAgaGcGGCgCCg -3'
miRNA:   3'- aaAGGGGGGGCcc--GGCGUggC-CCG-GG- -5'
5704 5' -68.1 NC_001806.1 + 30578 0.66 0.35989
Target:  5'- -gUCCCCCCC---UCGCGCCggcagGGGCCa -3'
miRNA:   3'- aaAGGGGGGGcccGGCGUGG-----CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 143450 0.66 0.35989
Target:  5'- ---aCCCCCCGGGCCGUGuCCuuGCUUu -3'
miRNA:   3'- aaagGGGGGGCCCGGCGU-GGccCGGG- -5'
5704 5' -68.1 NC_001806.1 + 27057 0.66 0.35989
Target:  5'- -gUgCCUggggCCCGaGGCCcguGC-CCGGGCCCu -3'
miRNA:   3'- aaAgGGG----GGGC-CCGG---CGuGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 150874 0.66 0.35989
Target:  5'- --gCUCCgcgggccagggCCCGGGCaCGgGCCucGGGCCCc -3'
miRNA:   3'- aaaGGGG-----------GGGCCCG-GCgUGG--CCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.