miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 132836 0.74 0.104968
Target:  5'- --aCCCgCCCGcGGCCGU--CGGGCCCg -3'
miRNA:   3'- aaaGGGgGGGC-CCGGCGugGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 115830 0.74 0.104968
Target:  5'- -gUCCCCgCCGacaaGCCGCgauuccgaggGCCGGGCCCc -3'
miRNA:   3'- aaAGGGGgGGCc---CGGCG----------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 3336 0.74 0.107294
Target:  5'- --gUCCCUCC-GGCCGCggggggcuggcggGCCGGGCCCc -3'
miRNA:   3'- aaaGGGGGGGcCCGGCG-------------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 56699 0.74 0.107556
Target:  5'- --gCCCgggaaCCCCGGGUCGCuCUGGGUCCu -3'
miRNA:   3'- aaaGGG-----GGGGCCCGGCGuGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 1900 0.74 0.112913
Target:  5'- ----aCCCCCGGGCCGaACaCGcGGCCCg -3'
miRNA:   3'- aaaggGGGGGCCCGGCgUG-GC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 56821 0.74 0.115404
Target:  5'- -gUCgCCCCCGGGcCCGCcaacaccGCCGcGGCCa -3'
miRNA:   3'- aaAGgGGGGGCCC-GGCG-------UGGC-CCGGg -5'
5704 5' -68.1 NC_001806.1 + 30187 0.74 0.115684
Target:  5'- --cCCCCCgcguCCGcGGCCGCGUCGGGaCCCg -3'
miRNA:   3'- aaaGGGGG----GGC-CCGGCGUGGCCC-GGG- -5'
5704 5' -68.1 NC_001806.1 + 1539 0.74 0.118518
Target:  5'- -gUCCCUCCgCGGcCCGCgccACCGGGCCg -3'
miRNA:   3'- aaAGGGGGG-GCCcGGCG---UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 147973 0.73 0.12054
Target:  5'- --aCCCCCCCggagGGGCCagacgccccccgcgGCGCCGcGGCUCg -3'
miRNA:   3'- aaaGGGGGGG----CCCGG--------------CGUGGC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 33149 0.73 0.130514
Target:  5'- --gCCCCucguCCCGGGCCGUACgCGGccuucGCCCc -3'
miRNA:   3'- aaaGGGG----GGGCCCGGCGUG-GCC-----CGGG- -5'
5704 5' -68.1 NC_001806.1 + 90155 0.73 0.136923
Target:  5'- -gUCCCCCCCGGGCC-C-CUGGGauaCg -3'
miRNA:   3'- aaAGGGGGGGCCCGGcGuGGCCCgg-G- -5'
5704 5' -68.1 NC_001806.1 + 103797 0.72 0.139234
Target:  5'- ----aCCCCCGGGCgGCGCCgccgcggcggcgacGGGCUCg -3'
miRNA:   3'- aaaggGGGGGCCCGgCGUGG--------------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 21141 0.72 0.140236
Target:  5'- ---gCUCCCCGGGCCcCACCgacGGGCCg -3'
miRNA:   3'- aaagGGGGGGCCCGGcGUGG---CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 37588 0.72 0.140236
Target:  5'- --gCCCUCCUuGGCCcgccaGCACCgGGGCCCa -3'
miRNA:   3'- aaaGGGGGGGcCCGG-----CGUGG-CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 23788 0.72 0.143621
Target:  5'- --aCCCCCaCgGGGCCGC-CgGGGgCCg -3'
miRNA:   3'- aaaGGGGG-GgCCCGGCGuGgCCCgGG- -5'
5704 5' -68.1 NC_001806.1 + 55472 0.72 0.143621
Target:  5'- -aUCUgCaCCCGcGaGCCGUACCGGGCCa -3'
miRNA:   3'- aaAGGgG-GGGC-C-CGGCGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 32971 0.72 0.150617
Target:  5'- ---gCCCCuuGGGuCCGC-CgGGGCCCc -3'
miRNA:   3'- aaagGGGGggCCC-GGCGuGgCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 111440 0.72 0.150617
Target:  5'- cUUUCCCCCCCGa-CCgGCACCcGGCCUc -3'
miRNA:   3'- -AAAGGGGGGGCccGG-CGUGGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 106687 0.72 0.157921
Target:  5'- --aCCCCCCgGGGgCuCuucCCGGGCCCc -3'
miRNA:   3'- aaaGGGGGGgCCCgGcGu--GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 1426 0.72 0.161312
Target:  5'- --gCCCagcgaaUCCCGGGCgGCGCCggcggcaGGGCCCc -3'
miRNA:   3'- aaaGGG------GGGGCCCGgCGUGG-------CCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.