Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 53249 | 1.07 | 0.000363 |
Target: 5'- uUUUCCCCCCCGGGCCGCACCGGGCCCc -3' miRNA: 3'- -AAAGGGGGGGCCCGGCGUGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 21890 | 0.82 | 0.029344 |
Target: 5'- --gCCUCCgCGGGCCGCaucgagcgccGCCGGGCCCg -3' miRNA: 3'- aaaGGGGGgGCCCGGCG----------UGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 26409 | 0.81 | 0.035942 |
Target: 5'- --gCCgCCCCC-GGCCGC-CCGGGCCCa -3' miRNA: 3'- aaaGG-GGGGGcCCGGCGuGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 121398 | 0.8 | 0.037807 |
Target: 5'- --aCCCCCCCGGagccgggcgcguGCUGCGCCuuGGGCCCg -3' miRNA: 3'- aaaGGGGGGGCC------------CGGCGUGG--CCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 51005 | 0.79 | 0.046731 |
Target: 5'- cUUCCCCCCCgcccccguaagcggcGGGuCCGUGuuGGGCCCg -3' miRNA: 3'- aAAGGGGGGG---------------CCC-GGCGUggCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 36822 | 0.79 | 0.048528 |
Target: 5'- gUUCCCUccgcccaCCCaGGCCGUacGCCGGGCCCa -3' miRNA: 3'- aAAGGGG-------GGGcCCGGCG--UGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 151257 | 0.77 | 0.065696 |
Target: 5'- ---gCCCCCCGGGCCcaCGCCGGGCg- -3' miRNA: 3'- aaagGGGGGGCCCGGc-GUGGCCCGgg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 121914 | 0.77 | 0.067185 |
Target: 5'- --gCCCCaccguugCCCGGGCCGUugcCCGGGCCUc -3' miRNA: 3'- aaaGGGG-------GGGCCCGGCGu--GGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 20157 | 0.76 | 0.074389 |
Target: 5'- --aCCCgCCCCccGCCGC-CCGGGCCCg -3' miRNA: 3'- aaaGGG-GGGGccCGGCGuGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 80001 | 0.76 | 0.077014 |
Target: 5'- --cCCCCCCCaggguucccguaggcGGGCCGCAgCGGcGCCUu -3' miRNA: 3'- aaaGGGGGGG---------------CCCGGCGUgGCC-CGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 29873 | 0.76 | 0.080124 |
Target: 5'- --cCCCCCUCGGcGCC-CAUCGGGCCa -3' miRNA: 3'- aaaGGGGGGGCC-CGGcGUGGCCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 2933 | 0.76 | 0.084179 |
Target: 5'- --gCCgCCUCCGGGCgGCcggGCCGGGCCg -3' miRNA: 3'- aaaGG-GGGGGCCCGgCG---UGGCCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 106352 | 0.76 | 0.084179 |
Target: 5'- --gCCCCCCCGaccGCCGguUgGGGCCCg -3' miRNA: 3'- aaaGGGGGGGCc--CGGCguGgCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 4174 | 0.75 | 0.08628 |
Target: 5'- --aCCCgCCCCGGGggcgggggcCCgGCGCCGGGCCa -3' miRNA: 3'- aaaGGG-GGGGCCC---------GG-CGUGGCCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 135066 | 0.75 | 0.092884 |
Target: 5'- --gCCCCgCgGGGaCGCGCCGGGCCg -3' miRNA: 3'- aaaGGGGgGgCCCgGCGUGGCCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 81265 | 0.75 | 0.095191 |
Target: 5'- ---aCUCCCCGGGCCuCACgGGGUCCc -3' miRNA: 3'- aaagGGGGGGCCCGGcGUGgCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 65658 | 0.75 | 0.099967 |
Target: 5'- -cUCCCCCUgGguGGCUGCGCUGGGgCCg -3' miRNA: 3'- aaAGGGGGGgC--CCGGCGUGGCCCgGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 2305 | 0.75 | 0.099967 |
Target: 5'- --gCCCCCCCGaGGCCcCGCCGccGGCCa -3' miRNA: 3'- aaaGGGGGGGC-CCGGcGUGGC--CCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 129667 | 0.74 | 0.102438 |
Target: 5'- --gCCCgCCCGGGCCGCcgaGcGGCCCg -3' miRNA: 3'- aaaGGGgGGGCCCGGCGuggC-CCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 131561 | 0.74 | 0.102438 |
Target: 5'- --cCCCCCCCGucaccGGuuuCCGCgacccACCGGGCCCg -3' miRNA: 3'- aaaGGGGGGGC-----CC---GGCG-----UGGCCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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