miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 129864 0.66 0.397992
Target:  5'- --cCCCCCUCGGGgaCGUgACCacgugGGGCCa -3'
miRNA:   3'- aaaGGGGGGGCCCg-GCG-UGG-----CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 106352 0.76 0.084179
Target:  5'- --gCCCCCCCGaccGCCGguUgGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCc--CGGCguGgCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 4174 0.75 0.08628
Target:  5'- --aCCCgCCCCGGGggcgggggcCCgGCGCCGGGCCa -3'
miRNA:   3'- aaaGGG-GGGGCCC---------GG-CGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 135066 0.75 0.092884
Target:  5'- --gCCCCgCgGGGaCGCGCCGGGCCg -3'
miRNA:   3'- aaaGGGGgGgCCCgGCGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 81265 0.75 0.095191
Target:  5'- ---aCUCCCCGGGCCuCACgGGGUCCc -3'
miRNA:   3'- aaagGGGGGGCCCGGcGUGgCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 2305 0.75 0.099967
Target:  5'- --gCCCCCCCGaGGCCcCGCCGccGGCCa -3'
miRNA:   3'- aaaGGGGGGGC-CCGGcGUGGC--CCGGg -5'
5704 5' -68.1 NC_001806.1 + 65658 0.75 0.099967
Target:  5'- -cUCCCCCUgGguGGCUGCGCUGGGgCCg -3'
miRNA:   3'- aaAGGGGGGgC--CCGGCGUGGCCCgGG- -5'
5704 5' -68.1 NC_001806.1 + 129667 0.74 0.102438
Target:  5'- --gCCCgCCCGGGCCGCcgaGcGGCCCg -3'
miRNA:   3'- aaaGGGgGGGCCCGGCGuggC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 131561 0.74 0.102438
Target:  5'- --cCCCCCCCGucaccGGuuuCCGCgacccACCGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGC-----CC---GGCG-----UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 2933 0.76 0.084179
Target:  5'- --gCCgCCUCCGGGCgGCcggGCCGGGCCg -3'
miRNA:   3'- aaaGG-GGGGGCCCGgCG---UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 29873 0.76 0.080124
Target:  5'- --cCCCCCUCGGcGCC-CAUCGGGCCa -3'
miRNA:   3'- aaaGGGGGGGCC-CGGcGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 80001 0.76 0.077014
Target:  5'- --cCCCCCCCaggguucccguaggcGGGCCGCAgCGGcGCCUu -3'
miRNA:   3'- aaaGGGGGGG---------------CCCGGCGUgGCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 21890 0.82 0.029344
Target:  5'- --gCCUCCgCGGGCCGCaucgagcgccGCCGGGCCCg -3'
miRNA:   3'- aaaGGGGGgGCCCGGCG----------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 26409 0.81 0.035942
Target:  5'- --gCCgCCCCC-GGCCGC-CCGGGCCCa -3'
miRNA:   3'- aaaGG-GGGGGcCCGGCGuGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 121398 0.8 0.037807
Target:  5'- --aCCCCCCCGGagccgggcgcguGCUGCGCCuuGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCC------------CGGCGUGG--CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 51005 0.79 0.046731
Target:  5'- cUUCCCCCCCgcccccguaagcggcGGGuCCGUGuuGGGCCCg -3'
miRNA:   3'- aAAGGGGGGG---------------CCC-GGCGUggCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 36822 0.79 0.048528
Target:  5'- gUUCCCUccgcccaCCCaGGCCGUacGCCGGGCCCa -3'
miRNA:   3'- aAAGGGG-------GGGcCCGGCG--UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 151257 0.77 0.065696
Target:  5'- ---gCCCCCCGGGCCcaCGCCGGGCg- -3'
miRNA:   3'- aaagGGGGGGCCCGGc-GUGGCCCGgg -5'
5704 5' -68.1 NC_001806.1 + 121914 0.77 0.067185
Target:  5'- --gCCCCaccguugCCCGGGCCGUugcCCGGGCCUc -3'
miRNA:   3'- aaaGGGG-------GGGCCCGGCGu--GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 20157 0.76 0.074389
Target:  5'- --aCCCgCCCCccGCCGC-CCGGGCCCg -3'
miRNA:   3'- aaaGGG-GGGGccCGGCGuGGCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.