Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 129864 | 0.66 | 0.397992 |
Target: 5'- --cCCCCCUCGGGgaCGUgACCacgugGGGCCa -3' miRNA: 3'- aaaGGGGGGGCCCg-GCG-UGG-----CCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 5923 | 0.66 | 0.357687 |
Target: 5'- --gCCCCCCCauuggccggcgggcGGGaCCGCcccaaggggGCgGGGCCg -3' miRNA: 3'- aaaGGGGGGG--------------CCC-GGCG---------UGgCCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 99990 | 0.66 | 0.372556 |
Target: 5'- --gCCUCCCCGGGguaguacggguaguCCGCGuCCGGuucGUCCu -3' miRNA: 3'- aaaGGGGGGGCCC--------------GGCGU-GGCC---CGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 21512 | 0.66 | 0.367304 |
Target: 5'- --gCCCCggCCCgGGGCCGCgaaCGGGaggcCCCg -3' miRNA: 3'- aaaGGGG--GGG-CCCGGCGug-GCCC----GGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 46103 | 0.66 | 0.367304 |
Target: 5'- -gUCCggCCCgGGGCCuGCGCgGGcGCCUc -3' miRNA: 3'- aaAGGg-GGGgCCCGG-CGUGgCC-CGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 27057 | 0.66 | 0.35989 |
Target: 5'- -gUgCCUggggCCCGaGGCCcguGC-CCGGGCCCu -3' miRNA: 3'- aaAgGGG----GGGC-CCGG---CGuGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 132995 | 0.66 | 0.35041 |
Target: 5'- -cUCCCucagagCCCUGGGCCggggccgucuuggaGCGCCuGGUCCc -3' miRNA: 3'- aaAGGG------GGGGCCCGG--------------CGUGGcCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 143450 | 0.66 | 0.35989 |
Target: 5'- ---aCCCCCCGGGCCGUGuCCuuGCUUu -3' miRNA: 3'- aaagGGGGGGCCCGGCGU-GGccCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 83314 | 0.66 | 0.367304 |
Target: 5'- --cCCCCggauCCCuguggggagGGGCUuuugGaCACCGGGCCCu -3' miRNA: 3'- aaaGGGG----GGG---------CCCGG----C-GUGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 23821 | 0.66 | 0.367304 |
Target: 5'- --gCCCCCUgcgcgccuCGGGCCcgcuGCGCCGcauggcGGCCUg -3' miRNA: 3'- aaaGGGGGG--------GCCCGG----CGUGGC------CCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 150874 | 0.66 | 0.35989 |
Target: 5'- --gCUCCgcgggccagggCCCGGGCaCGgGCCucGGGCCCc -3' miRNA: 3'- aaaGGGG-----------GGGCCCG-GCgUGG--CCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 68435 | 0.66 | 0.35989 |
Target: 5'- --aCCUCCCCGGGuuGCucguacACCGcuuggugguGGCUCu -3' miRNA: 3'- aaaGGGGGGGCCCggCG------UGGC---------CCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 30578 | 0.66 | 0.35989 |
Target: 5'- -gUCCCCCCC---UCGCGCCggcagGGGCCa -3' miRNA: 3'- aaAGGGGGGGcccGGCGUGG-----CCCGGg -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 1381 | 0.66 | 0.367304 |
Target: 5'- --gCCCCCgCCgccgccagcacGGuGCCGCugCGG-CCCg -3' miRNA: 3'- aaaGGGGG-GG-----------CC-CGGCGugGCCcGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 129591 | 0.66 | 0.374822 |
Target: 5'- --gCCaUgCCCGGGUuuucggCGCGCCGGuGCCUg -3' miRNA: 3'- aaaGG-GgGGGCCCG------GCGUGGCC-CGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 144570 | 0.66 | 0.351857 |
Target: 5'- cUUUCCgggcgcgUCCgGGuGCCGCGgcucuCCGGGCCCc -3' miRNA: 3'- aAAGGG-------GGGgCC-CGGCGU-----GGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 52389 | 0.66 | 0.367304 |
Target: 5'- --gCCCCCCUGuuccccacgauGaCCGCccccaGCUGGGCCCg -3' miRNA: 3'- aaaGGGGGGGC-----------CcGGCG-----UGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 24806 | 0.66 | 0.352582 |
Target: 5'- --gCCCugCCgCCGGcGCCGCccgggauucGCUGGGCCUc -3' miRNA: 3'- aaaGGG--GG-GGCC-CGGCG---------UGGCCCGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 135219 | 0.66 | 0.367304 |
Target: 5'- -cUCCuCCCCCaGGauGaCAUCGGaGCCCg -3' miRNA: 3'- aaAGG-GGGGGcCCggC-GUGGCC-CGGG- -5' |
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5704 | 5' | -68.1 | NC_001806.1 | + | 113662 | 0.66 | 0.367304 |
Target: 5'- --aCCUUCCCGaggagugcauGGCCGUguACCGGGaCCUg -3' miRNA: 3'- aaaGGGGGGGC----------CCGGCG--UGGCCC-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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