Results 21 - 40 of 203 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 132995 | 0.66 | 0.35041 |
Target: 5'- -cUCCCucagagCCCUGGGCCggggccgucuuggaGCGCCuGGUCCc -3' miRNA: 3'- aaAGGG------GGGGCCCGG--------------CGUGGcCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 150874 | 0.66 | 0.35989 |
Target: 5'- --gCUCCgcgggccagggCCCGGGCaCGgGCCucGGGCCCc -3' miRNA: 3'- aaaGGGG-----------GGGCCCG-GCgUGG--CCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 107462 | 0.66 | 0.390167 |
Target: 5'- --gCCgaCCUCCGGaCCGCGCUGG-CCCg -3' miRNA: 3'- aaaGG--GGGGGCCcGGCGUGGCCcGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 46103 | 0.66 | 0.367304 |
Target: 5'- -gUCCggCCCgGGGCCuGCGCgGGcGCCUc -3' miRNA: 3'- aaAGGg-GGGgCCCGG-CGUGgCC-CGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 32938 | 0.66 | 0.374822 |
Target: 5'- ---aUgCgCCGGGCCGUugUGgGGCCCc -3' miRNA: 3'- aaagGgGgGGCCCGGCGugGC-CCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 106177 | 0.66 | 0.382443 |
Target: 5'- -cUCCCCCCUcGGUCGCcCCccuuaaGGGUCUc -3' miRNA: 3'- aaAGGGGGGGcCCGGCGuGG------CCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 125501 | 0.66 | 0.390167 |
Target: 5'- -----gCCCCGGGCCGCgucGCCGGcacuuucugacGCCUc -3' miRNA: 3'- aaagggGGGGCCCGGCG---UGGCC-----------CGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 37778 | 0.66 | 0.382443 |
Target: 5'- cUUUCgCUCCgGGGCCgggGCGCgGgGGUCCg -3' miRNA: 3'- -AAAGgGGGGgCCCGG---CGUGgC-CCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 120789 | 0.66 | 0.390167 |
Target: 5'- -cUCCUCCCCGcGCCGUu---GGCCCc -3' miRNA: 3'- aaAGGGGGGGCcCGGCGuggcCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 83314 | 0.66 | 0.367304 |
Target: 5'- --cCCCCggauCCCuguggggagGGGCUuuugGaCACCGGGCCCu -3' miRNA: 3'- aaaGGGG----GGG---------CCCGG----C-GUGGCCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 135219 | 0.66 | 0.367304 |
Target: 5'- -cUCCuCCCCCaGGauGaCAUCGGaGCCCg -3' miRNA: 3'- aaAGG-GGGGGcCCggC-GUGGCC-CGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 79484 | 0.66 | 0.397992 |
Target: 5'- ---gCCCCCUGGGCCGgCAgUcacGGCUCg -3' miRNA: 3'- aaagGGGGGGCCCGGC-GUgGc--CCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 129864 | 0.66 | 0.397992 |
Target: 5'- --cCCCCCUCGGGgaCGUgACCacgugGGGCCa -3' miRNA: 3'- aaaGGGGGGGCCCg-GCG-UGG-----CCCGGg -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 148437 | 0.66 | 0.390167 |
Target: 5'- --gCCCCCCCaGGGUCagGUACCgcgGGGCgaaCCg -3' miRNA: 3'- aaaGGGGGGG-CCCGG--CGUGG---CCCG---GG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 130077 | 0.66 | 0.382443 |
Target: 5'- -----gCUCCGGGgCGCGCuCGGaGCCCg -3' miRNA: 3'- aaagggGGGGCCCgGCGUG-GCC-CGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 126320 | 0.66 | 0.382443 |
Target: 5'- ---aCCCCCCuGGCCuuuuacgagGUcaaauGCCGGGCCa -3' miRNA: 3'- aaagGGGGGGcCCGG---------CG-----UGGCCCGGg -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 1381 | 0.66 | 0.367304 |
Target: 5'- --gCCCCCgCCgccgccagcacGGuGCCGCugCGG-CCCg -3' miRNA: 3'- aaaGGGGG-GG-----------CC-CGGCGugGCCcGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 26675 | 0.66 | 0.397992 |
Target: 5'- ---gCCCCCCGgccccGGCCccCACCgcccggcguGGGCCCg -3' miRNA: 3'- aaagGGGGGGC-----CCGGc-GUGG---------CCCGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 122159 | 0.66 | 0.387839 |
Target: 5'- gUUUCCCCuuuaacgugguccaCUCGGGCCGaACCGaaccaGCCCc -3' miRNA: 3'- -AAAGGGG--------------GGGCCCGGCgUGGCc----CGGG- -5' |
|||||||
5704 | 5' | -68.1 | NC_001806.1 | + | 129591 | 0.66 | 0.374822 |
Target: 5'- --gCCaUgCCCGGGUuuucggCGCGCCGGuGCCUg -3' miRNA: 3'- aaaGG-GgGGGCCCG------GCGUGGCC-CGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home