miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 10835 0.68 0.300516
Target:  5'- gUUCCacggCCCauaguaguuucugggUCGGGCCGCGCCccguaGGCCCc -3'
miRNA:   3'- aAAGG----GGG---------------GGCCCGGCGUGGc----CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 15850 0.67 0.331293
Target:  5'- --gCCCCUuuUgGGGCCGCGggGGGCCg -3'
miRNA:   3'- aaaGGGGG--GgCCCGGCGUggCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 17175 0.71 0.181787
Target:  5'- --gCCCCCCCGGGaaggcggguCUGUggACCguaGGGCCCu -3'
miRNA:   3'- aaaGGGGGGGCCC---------GGCG--UGG---CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 18734 0.67 0.304402
Target:  5'- -aUCacaCUCCGGGCCGUACCGucuGGUCUc -3'
miRNA:   3'- aaAGgg-GGGGCCCGGCGUGGC---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 19052 0.69 0.255724
Target:  5'- -cUCCgCCUCUGGGCCuggcGCACCGaGCgCCg -3'
miRNA:   3'- aaAGG-GGGGGCCCGG----CGUGGCcCG-GG- -5'
5704 5' -68.1 NC_001806.1 + 19180 0.67 0.310303
Target:  5'- -aUCCCgCCgauCGGgagagcucgugaGCCGCAgguuuacCCGGGCCCg -3'
miRNA:   3'- aaAGGGgGG---GCC------------CGGCGU-------GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 20109 0.68 0.297947
Target:  5'- --gCCgUCUgCGGGCgucgguCGCGCCGGGCCUu -3'
miRNA:   3'- aaaGG-GGGgGCCCG------GCGUGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 20157 0.76 0.074389
Target:  5'- --aCCCgCCCCccGCCGC-CCGGGCCCg -3'
miRNA:   3'- aaaGGG-GGGGccCGGCGuGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 20181 0.67 0.345379
Target:  5'- ---gCCCCCgGGGCCGgCGCggaguCGGGCa- -3'
miRNA:   3'- aaagGGGGGgCCCGGC-GUG-----GCCCGgg -5'
5704 5' -68.1 NC_001806.1 + 20636 0.7 0.213613
Target:  5'- gUUCgaCCaaCGGGCCGCGgccaCGGGCCCc -3'
miRNA:   3'- aAAGg-GGggGCCCGGCGUg---GCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 21141 0.72 0.140236
Target:  5'- ---gCUCCCCGGGCCcCACCgacGGGCCg -3'
miRNA:   3'- aaagGGGGGGCCCGGcGUGG---CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 21512 0.66 0.367304
Target:  5'- --gCCCCggCCCgGGGCCGCgaaCGGGaggcCCCg -3'
miRNA:   3'- aaaGGGG--GGG-CCCGGCGug-GCCC----GGG- -5'
5704 5' -68.1 NC_001806.1 + 21558 0.67 0.338283
Target:  5'- -aUCCggaCCCCaCGGaccgccugucGCCGCGCCcgccGGCCCa -3'
miRNA:   3'- aaAGG---GGGG-GCC----------CGGCGUGGc---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 21803 0.68 0.291599
Target:  5'- ----gCCCCCGGGCgGaCGCCGcccccGCCCg -3'
miRNA:   3'- aaaggGGGGGCCCGgC-GUGGCc----CGGG- -5'
5704 5' -68.1 NC_001806.1 + 21835 0.71 0.165544
Target:  5'- --aCCCCCCCucuccgaGGCCGCGCCcaaGCCCc -3'
miRNA:   3'- aaaGGGGGGGc------CCGGCGUGGcc-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 21890 0.82 0.029344
Target:  5'- --gCCUCCgCGGGCCGCaucgagcgccGCCGGGCCCg -3'
miRNA:   3'- aaaGGGGGgGCCCGGCG----------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 22074 0.66 0.38939
Target:  5'- --cCCgCCCCCGGggcggguGCUGUACgGcGGCCUg -3'
miRNA:   3'- aaaGG-GGGGGCC-------CGGCGUGgC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 22627 0.66 0.397992
Target:  5'- --gCCgCCgCaCCGGGCgaGCGCgCGGuGCCCg -3'
miRNA:   3'- aaaGG-GG-G-GGCCCGg-CGUG-GCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 22876 0.68 0.285356
Target:  5'- --gCCgUCCCgGGGCUG-GCCgGGGCCCg -3'
miRNA:   3'- aaaGG-GGGGgCCCGGCgUGG-CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 22910 0.7 0.199424
Target:  5'- ---gCCCCCCGcGGCCGgAgggaccCgCGGGCCCc -3'
miRNA:   3'- aaagGGGGGGC-CCGGCgU------G-GCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.