miRNA display CGI


Results 1 - 20 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 1381 0.66 0.367304
Target:  5'- --gCCCCCgCCgccgccagcacGGuGCCGCugCGG-CCCg -3'
miRNA:   3'- aaaGGGGG-GG-----------CC-CGGCGugGCCcGGG- -5'
5704 5' -68.1 NC_001806.1 + 1426 0.72 0.161312
Target:  5'- --gCCCagcgaaUCCCGGGCgGCGCCggcggcaGGGCCCc -3'
miRNA:   3'- aaaGGG------GGGGCCCGgCGUGG-------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 1539 0.74 0.118518
Target:  5'- -gUCCCUCCgCGGcCCGCgccACCGGGCCg -3'
miRNA:   3'- aaAGGGGGG-GCCcGGCG---UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 1589 0.68 0.289089
Target:  5'- ---gCCCCagcgccacguacaCGGGCCGCAgCGGcgcGCCCa -3'
miRNA:   3'- aaagGGGGg------------GCCCGGCGUgGCC---CGGG- -5'
5704 5' -68.1 NC_001806.1 + 1662 0.69 0.233873
Target:  5'- -cUCCUCCUCGcagaaguccGG-CGCGCCGGGCgCCa -3'
miRNA:   3'- aaAGGGGGGGC---------CCgGCGUGGCCCG-GG- -5'
5704 5' -68.1 NC_001806.1 + 1900 0.74 0.112913
Target:  5'- ----aCCCCCGGGCCGaACaCGcGGCCCg -3'
miRNA:   3'- aaaggGGGGGCCCGGCgUG-GC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 2305 0.75 0.099967
Target:  5'- --gCCCCCCCGaGGCCcCGCCGccGGCCa -3'
miRNA:   3'- aaaGGGGGGGC-CCGGcGUGGC--CCGGg -5'
5704 5' -68.1 NC_001806.1 + 2933 0.76 0.084179
Target:  5'- --gCCgCCUCCGGGCgGCcggGCCGGGCCg -3'
miRNA:   3'- aaaGG-GGGGGCCCGgCG---UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 3336 0.74 0.107294
Target:  5'- --gUCCCUCC-GGCCGCggggggcuggcggGCCGGGCCCc -3'
miRNA:   3'- aaaGGGGGGGcCCGGCG-------------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 3587 0.7 0.20406
Target:  5'- --aUCCCCgCGGcGCCGUACCcggcGGGCaCCg -3'
miRNA:   3'- aaaGGGGGgGCC-CGGCGUGG----CCCG-GG- -5'
5704 5' -68.1 NC_001806.1 + 3653 0.67 0.331293
Target:  5'- --aCCCCCUCGucauCUGCGCCGGcGCCg -3'
miRNA:   3'- aaaGGGGGGGCcc--GGCGUGGCC-CGGg -5'
5704 5' -68.1 NC_001806.1 + 4174 0.75 0.08628
Target:  5'- --aCCCgCCCCGGGggcgggggcCCgGCGCCGGGCCa -3'
miRNA:   3'- aaaGGG-GGGGCCC---------GG-CGUGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 4282 0.69 0.255724
Target:  5'- --aCCCgCCgGGGCUGCccgGCCGugaagcGGCCCg -3'
miRNA:   3'- aaaGGGgGGgCCCGGCG---UGGC------CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 4728 0.7 0.213613
Target:  5'- -cUCCCguucgcggCCCCGGGCCG----GGGCCCg -3'
miRNA:   3'- aaAGGG--------GGGGCCCGGCguggCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 5061 0.66 0.374822
Target:  5'- ---gCCCCCCGcucGUCGCGguCUGGGCUCg -3'
miRNA:   3'- aaagGGGGGGCc--CGGCGU--GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 5576 0.67 0.310964
Target:  5'- --cCCCgCCCCGacGCCGgcaCGCCggGGGCCCg -3'
miRNA:   3'- aaaGGG-GGGGCc-CGGC---GUGG--CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 5823 0.71 0.190426
Target:  5'- --gCCCCgcgcgCCCGuuGGCCGUccCCGGGCCCc -3'
miRNA:   3'- aaaGGGG-----GGGC--CCGGCGu-GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 5923 0.66 0.357687
Target:  5'- --gCCCCCCCauuggccggcgggcGGGaCCGCcccaaggggGCgGGGCCg -3'
miRNA:   3'- aaaGGGGGGG--------------CCC-GGCG---------UGgCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 6836 0.67 0.317633
Target:  5'- --gCUCUCCCGGGCUGCugcCCGaaaucGCCCc -3'
miRNA:   3'- aaaGGGGGGGCCCGGCGu--GGCc----CGGG- -5'
5704 5' -68.1 NC_001806.1 + 6987 0.67 0.331293
Target:  5'- gUUCCCCCCCGuGGCUcucgagaugaGCcagacccaACCcccGGCCCc -3'
miRNA:   3'- aAAGGGGGGGC-CCGG----------CG--------UGGc--CCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.