miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 151257 0.77 0.065696
Target:  5'- ---gCCCCCCGGGCCcaCGCCGGGCg- -3'
miRNA:   3'- aaagGGGGGGCCCGGc-GUGGCCCGgg -5'
5704 5' -68.1 NC_001806.1 + 150939 0.69 0.239184
Target:  5'- -cUCCgCCaCCCGGcGCCGgaACCGaGCCCg -3'
miRNA:   3'- aaAGG-GG-GGGCC-CGGCg-UGGCcCGGG- -5'
5704 5' -68.1 NC_001806.1 + 150874 0.66 0.35989
Target:  5'- --gCUCCgcgggccagggCCCGGGCaCGgGCCucGGGCCCc -3'
miRNA:   3'- aaaGGGG-----------GGGCCCG-GCgUGG--CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 150621 0.67 0.323727
Target:  5'- -cUCCCgCCCaaugggcCGGGCCccgaagacucgGCggacgcugguugGCCGGGCCCc -3'
miRNA:   3'- aaAGGG-GGG-------GCCCGG-----------CG------------UGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 150066 0.68 0.284738
Target:  5'- aUUCCCCCaauGGCCGCGCgucccaggggaggCaGGCCCa -3'
miRNA:   3'- aAAGGGGGggcCCGGCGUG-------------GcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 148822 0.67 0.331293
Target:  5'- -cUCCCCCCCGaGaCCGCccccccauccacGCCcugcGGCCCc -3'
miRNA:   3'- aaAGGGGGGGCcC-GGCG------------UGGc---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 148437 0.66 0.390167
Target:  5'- --gCCCCCCCaGGGUCagGUACCgcgGGGCgaaCCg -3'
miRNA:   3'- aaaGGGGGGG-CCCGG--CGUGG---CCCG---GG- -5'
5704 5' -68.1 NC_001806.1 + 147973 0.73 0.12054
Target:  5'- --aCCCCCCCggagGGGCCagacgccccccgcgGCGCCGcGGCUCg -3'
miRNA:   3'- aaaGGGGGGG----CCCGG--------------CGUGGC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147676 0.7 0.19488
Target:  5'- -cUCCgCCCCggGGGCCgggGCGCgggggCGGGCCCc -3'
miRNA:   3'- aaAGGgGGGG--CCCGG---CGUG-----GCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147552 0.7 0.20406
Target:  5'- --gCCCCCCCGaGCCGCGCgccaccgucgcaCGcGCCCg -3'
miRNA:   3'- aaaGGGGGGGCcCGGCGUG------------GCcCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147312 0.71 0.186062
Target:  5'- ---gCCCaCCCuGGCCGCGCCcccccGGCCCu -3'
miRNA:   3'- aaagGGG-GGGcCCGGCGUGGc----CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147152 0.67 0.345379
Target:  5'- -cUCCCUCCCaGG--GCACCGacGGCCCc -3'
miRNA:   3'- aaAGGGGGGGcCCggCGUGGC--CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 147094 0.68 0.285356
Target:  5'- cUUCCucggCCCCCGcGGCCcagaagcaGCGCgGGGgCCg -3'
miRNA:   3'- aAAGG----GGGGGC-CCGG--------CGUGgCCCgGG- -5'
5704 5' -68.1 NC_001806.1 + 144956 0.67 0.331293
Target:  5'- --gCCggCCCCCGuGGCgGCccgGCCcgGGGCCCc -3'
miRNA:   3'- aaaGG--GGGGGC-CCGgCG---UGG--CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144825 0.71 0.181787
Target:  5'- --gCCCCCgaCCGcGGCgGU-CCGGGCCCc -3'
miRNA:   3'- aaaGGGGG--GGC-CCGgCGuGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144782 0.68 0.273189
Target:  5'- -gUCCCCUCaCGGGgCGaagGCCGcguacGGCCCg -3'
miRNA:   3'- aaAGGGGGG-GCCCgGCg--UGGC-----CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144570 0.66 0.351857
Target:  5'- cUUUCCgggcgcgUCCgGGuGCCGCGgcucuCCGGGCCCc -3'
miRNA:   3'- aAAGGG-------GGGgCC-CGGCGU-----GGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 144342 0.67 0.304402
Target:  5'- ---gCCCCCCGccCCGCGCC-GGUCCa -3'
miRNA:   3'- aaagGGGGGGCccGGCGUGGcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 143450 0.66 0.35989
Target:  5'- ---aCCCCCCGGGCCGUGuCCuuGCUUu -3'
miRNA:   3'- aaagGGGGGGCCCGGCGU-GGccCGGG- -5'
5704 5' -68.1 NC_001806.1 + 143399 0.69 0.254028
Target:  5'- -cUCCCCggcggCCGGGUCGCggcucuuacgagcgGCCcGGCCCg -3'
miRNA:   3'- aaAGGGGg----GGCCCGGCG--------------UGGcCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.