miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5708 3' -58.2 NC_001806.1 + 2217 0.66 0.823334
Target:  5'- cAGGCGG--CCGUGU--CCGGCCCGCa -3'
miRNA:   3'- cUCUGCCcuGGCGCGuuGGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 2525 0.78 0.234814
Target:  5'- gGGGGCGGGcccggcgcACCGCGCGgcgaucgagGCCAggGCCCGCg -3'
miRNA:   3'- -CUCUGCCC--------UGGCGCGU---------UGGU--UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 2740 0.68 0.72234
Target:  5'- -cGGCGGGcCgGCGCGACaCGG-CCACg -3'
miRNA:   3'- cuCUGCCCuGgCGCGUUG-GUUgGGUG- -5'
5708 3' -58.2 NC_001806.1 + 2771 0.7 0.592008
Target:  5'- cGGGCGGGccugcGCCGCgGCGGCCcggGGCgCCGCg -3'
miRNA:   3'- cUCUGCCC-----UGGCG-CGUUGG---UUG-GGUG- -5'
5708 3' -58.2 NC_001806.1 + 2954 0.67 0.741727
Target:  5'- cGGGcCGGGACUcuuGCGCuugcGCCccuCCCGCg -3'
miRNA:   3'- -CUCuGCCCUGG---CGCGu---UGGuu-GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3096 0.66 0.797364
Target:  5'- -cGGCGGcGGCCGCGgAGCuCGGcaggcgcggguCCCGCg -3'
miRNA:   3'- cuCUGCC-CUGGCGCgUUG-GUU-----------GGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3286 0.67 0.754133
Target:  5'- cAGGCGGGGCgcgucggCGUGCGGCgGcggcggggaagcgggGCCCGCg -3'
miRNA:   3'- cUCUGCCCUG-------GCGCGUUGgU---------------UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3357 0.7 0.581974
Target:  5'- -uGGCGGG-CCGgGCcccGGCCAGCCC-Cg -3'
miRNA:   3'- cuCUGCCCuGGCgCG---UUGGUUGGGuG- -5'
5708 3' -58.2 NC_001806.1 + 3440 0.66 0.822492
Target:  5'- cAGGCGGccaggcacucgacGGCCaCGCGGCCGGCCUggGCg -3'
miRNA:   3'- cUCUGCC-------------CUGGcGCGUUGGUUGGG--UG- -5'
5708 3' -58.2 NC_001806.1 + 3547 0.7 0.602071
Target:  5'- gGAGGCGGGcGCgGCGgaCAGCCGcCCCAg -3'
miRNA:   3'- -CUCUGCCC-UGgCGC--GUUGGUuGGGUg -5'
5708 3' -58.2 NC_001806.1 + 3606 0.72 0.47519
Target:  5'- -cGGCGGGcACCGCGCG-CUcGCCCGg -3'
miRNA:   3'- cuCUGCCC-UGGCGCGUuGGuUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 4183 0.67 0.741727
Target:  5'- gGGGGCGGGGgcCCG-GCG-CCGGgCCACg -3'
miRNA:   3'- -CUCUGCCCU--GGCgCGUuGGUUgGGUG- -5'
5708 3' -58.2 NC_001806.1 + 4441 0.66 0.814837
Target:  5'- gGGGGCGGcGuCCGCccggggGCuGCCGGCgCCGCg -3'
miRNA:   3'- -CUCUGCC-CuGGCG------CGuUGGUUG-GGUG- -5'
5708 3' -58.2 NC_001806.1 + 5505 0.66 0.806177
Target:  5'- gGAGcaGCGGaGGCCGC-CGGCCc-CCCGCc -3'
miRNA:   3'- -CUC--UGCC-CUGGCGcGUUGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 5675 0.72 0.47519
Target:  5'- aGGGCGGGuggguCCGCGCc-CCGcCCCGCa -3'
miRNA:   3'- cUCUGCCCu----GGCGCGuuGGUuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 5940 0.67 0.76074
Target:  5'- cGGGCGGGACCGCcccaagGgGGCgGGgCCGCc -3'
miRNA:   3'- cUCUGCCCUGGCG------CgUUGgUUgGGUG- -5'
5708 3' -58.2 NC_001806.1 + 6099 0.68 0.678724
Target:  5'- gGGGGCGGGucucuccggcGCacauaaaggcccgGCGCGACCGacGCCCGCa -3'
miRNA:   3'- -CUCUGCCC----------UGg------------CGCGUUGGU--UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 6572 0.68 0.72234
Target:  5'- aGGAgGGGGcucacCCGCGUucguGCCuuCCCGCa -3'
miRNA:   3'- cUCUgCCCU-----GGCGCGu---UGGuuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 6900 0.66 0.797364
Target:  5'- -cGGCGGGACCGUG--ACCGAcagucCCCGu -3'
miRNA:   3'- cuCUGCCCUGGCGCguUGGUU-----GGGUg -5'
5708 3' -58.2 NC_001806.1 + 7345 0.74 0.395576
Target:  5'- aGAGACcccaGGGuACCGCGUGACCccaggGAUCCACg -3'
miRNA:   3'- -CUCUG----CCC-UGGCGCGUUGG-----UUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.