miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5708 3' -58.2 NC_001806.1 + 66514 0.66 0.831662
Target:  5'- cGGGGuuugGGGAUUG-GCGGCCAgGCCCGCg -3'
miRNA:   3'- -CUCUg---CCCUGGCgCGUUGGU-UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 149061 0.73 0.438767
Target:  5'- uGGGGgGGGAuuucCCGCGuCAAUCAgcACCCACg -3'
miRNA:   3'- -CUCUgCCCU----GGCGC-GUUGGU--UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 35520 0.73 0.447725
Target:  5'- gGAG-CGGGGCCGCuCAcGCCAAgCCGCc -3'
miRNA:   3'- -CUCuGCCCUGGCGcGU-UGGUUgGGUG- -5'
5708 3' -58.2 NC_001806.1 + 71935 0.73 0.447725
Target:  5'- gGGGGCGaguGGACgCGCGCGACCGcggGCCCu- -3'
miRNA:   3'- -CUCUGC---CCUG-GCGCGUUGGU---UGGGug -5'
5708 3' -58.2 NC_001806.1 + 114276 0.72 0.47519
Target:  5'- uGGACGGGcCCGCcaugcucacgcuGCAgguGCUGGCCCACa -3'
miRNA:   3'- cUCUGCCCuGGCG------------CGU---UGGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 3606 0.72 0.47519
Target:  5'- -cGGCGGGcACCGCGCG-CUcGCCCGg -3'
miRNA:   3'- cuCUGCCC-UGGCGCGUuGGuUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 5675 0.72 0.47519
Target:  5'- aGGGCGGGuggguCCGCGCc-CCGcCCCGCa -3'
miRNA:   3'- cUCUGCCCu----GGCGCGuuGGUuGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 20564 0.72 0.47519
Target:  5'- cGGGGCGGGG-CGCG-GACCcACCCGCc -3'
miRNA:   3'- -CUCUGCCCUgGCGCgUUGGuUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 45290 0.72 0.484531
Target:  5'- gGAGACGcGGGcCCGCGCGgggaGCC-GCCCGg -3'
miRNA:   3'- -CUCUGC-CCU-GGCGCGU----UGGuUGGGUg -5'
5708 3' -58.2 NC_001806.1 + 20621 0.73 0.429913
Target:  5'- uGGGCGGGGCCGgGgguuCGACCAACgggCCGCg -3'
miRNA:   3'- cUCUGCCCUGGCgC----GUUGGUUG---GGUG- -5'
5708 3' -58.2 NC_001806.1 + 51785 0.73 0.421164
Target:  5'- aGAG-CGGGGCCGUgGCGGCCAaguACgCCGCc -3'
miRNA:   3'- -CUCuGCCCUGGCG-CGUUGGU---UG-GGUG- -5'
5708 3' -58.2 NC_001806.1 + 7345 0.74 0.395576
Target:  5'- aGAGACcccaGGGuACCGCGUGACCccaggGAUCCACg -3'
miRNA:   3'- -CUCUG----CCC-UGGCGCGUUGG-----UUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 141419 0.78 0.208072
Target:  5'- cAGGcCGGGGCggCGCGCGGCCAACCgGCg -3'
miRNA:   3'- cUCU-GCCCUG--GCGCGUUGGUUGGgUG- -5'
5708 3' -58.2 NC_001806.1 + 27192 0.78 0.233131
Target:  5'- aGAGACGauggcaGGAgCCGCGCAuauauacgcuuggaGCCAGCCCGCc -3'
miRNA:   3'- -CUCUGC------CCU-GGCGCGU--------------UGGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 2525 0.78 0.234814
Target:  5'- gGGGGCGGGcccggcgcACCGCGCGgcgaucgagGCCAggGCCCGCg -3'
miRNA:   3'- -CUCUGCCC--------UGGCGCGU---------UGGU--UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 27850 0.76 0.303769
Target:  5'- gGGGACGGGGCCGCcccGCggUgGGCCUGCc -3'
miRNA:   3'- -CUCUGCCCUGGCG---CGuuGgUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 86168 0.75 0.317864
Target:  5'- uGGACGGGACCugcGCGCGGCgGGCCaugaGCu -3'
miRNA:   3'- cUCUGCCCUGG---CGCGUUGgUUGGg---UG- -5'
5708 3' -58.2 NC_001806.1 + 40862 0.75 0.325094
Target:  5'- cGGGGCGGGGaCGgGCAugCAcACCCGCa -3'
miRNA:   3'- -CUCUGCCCUgGCgCGUugGU-UGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 91349 0.74 0.355226
Target:  5'- ---cCGGGACCcacGUgGCGGCCAACCCACa -3'
miRNA:   3'- cucuGCCCUGG---CG-CGUUGGUUGGGUG- -5'
5708 3' -58.2 NC_001806.1 + 90887 0.74 0.36306
Target:  5'- uGGACGccguGGcCCGCGCGGCC-GCCCACc -3'
miRNA:   3'- cUCUGC----CCuGGCGCGUUGGuUGGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.