miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5708 5' -57.4 NC_001806.1 + 40047 0.66 0.841578
Target:  5'- gUGCCGGCGUcaaugguaaacagcGUGUGcaggcGGuuGCuGUCg -3'
miRNA:   3'- aACGGCCGCA--------------CACACaa---UCggCG-CAG- -5'
5708 5' -57.4 NC_001806.1 + 100810 0.66 0.835813
Target:  5'- -cGCCGGCGacagGUGgcgaaagGgcgcgaUGGCgGCGUCg -3'
miRNA:   3'- aaCGGCCGCa---CACa------Ca-----AUCGgCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 25939 0.66 0.835813
Target:  5'- -gGCgGGCGUGgg-GgcggGGCCGCGg- -3'
miRNA:   3'- aaCGgCCGCACacaCaa--UCGGCGCag -5'
5708 5' -57.4 NC_001806.1 + 66824 0.67 0.79213
Target:  5'- -gGCCGGCccggGUGgccgGUGUgcGCCGCcUCc -3'
miRNA:   3'- aaCGGCCG----CACa---CACAauCGGCGcAG- -5'
5708 5' -57.4 NC_001806.1 + 98640 0.67 0.754508
Target:  5'- -gGgCGGCGUG-GUaucGGCCGUGUCg -3'
miRNA:   3'- aaCgGCCGCACaCAcaaUCGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 137845 0.67 0.754508
Target:  5'- gUGuuGGUGUGUGUGggcucGCCgacgcagacgGCGUCc -3'
miRNA:   3'- aACggCCGCACACACaau--CGG----------CGCAG- -5'
5708 5' -57.4 NC_001806.1 + 4937 0.68 0.705095
Target:  5'- -cGCCGGCGUcgGUGcccGCCGCGg- -3'
miRNA:   3'- aaCGGCCGCAcaCACaauCGGCGCag -5'
5708 5' -57.4 NC_001806.1 + 3498 0.68 0.694988
Target:  5'- -cGUCGGCGUcgGcGUGgcgGGCgGCGUCg -3'
miRNA:   3'- aaCGGCCGCA--CaCACaa-UCGgCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 4760 0.69 0.664385
Target:  5'- -cGCCGGCGgc---GUcGGCUGCGUCg -3'
miRNA:   3'- aaCGGCCGCacacaCAaUCGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 146500 0.69 0.633543
Target:  5'- -cGCUGGUGUGUG-GUgc-CCGUGUCu -3'
miRNA:   3'- aaCGGCCGCACACaCAaucGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 108636 0.7 0.582218
Target:  5'- -aGCCGcGCG-GUGUGcgUGGCUGCGg- -3'
miRNA:   3'- aaCGGC-CGCaCACACa-AUCGGCGCag -5'
5708 5' -57.4 NC_001806.1 + 50752 0.71 0.541763
Target:  5'- gUGgUGGCGUGcGUGacacUGGCCGCGUUu -3'
miRNA:   3'- aACgGCCGCACaCACa---AUCGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 122366 0.72 0.473521
Target:  5'- -cGCUGGCGgaaGUGgcgcacGGCCGCGUCg -3'
miRNA:   3'- aaCGGCCGCa--CACacaa--UCGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 4503 0.73 0.43651
Target:  5'- -cGCCucGCGUGcGUGgucGGCCGCGUCg -3'
miRNA:   3'- aaCGGc-CGCACaCACaa-UCGGCGCAG- -5'
5708 5' -57.4 NC_001806.1 + 48785 1.07 0.002514
Target:  5'- gUUGCCGGCGUGUGUGUUAGCCGCGUCu -3'
miRNA:   3'- -AACGGCCGCACACACAAUCGGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.