miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 29161 0.66 0.774001
Target:  5'- cGCGAgGAAgACCCcggcaguugcGGGGGcgCCCCCc- -3'
miRNA:   3'- -UGCUgCUUgUGGG----------CCUCCa-GGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 29957 0.66 0.76504
Target:  5'- cGCGAgcCGcGGCGCCgCGGGGGgcgucuggccCCUCCGGg -3'
miRNA:   3'- -UGCU--GC-UUGUGG-GCCUCCa---------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 30244 0.66 0.763235
Target:  5'- uGCGuGCGAGCgccgccuccgggGCCCGGcccccgcgccccGG-CCCCCGGg -3'
miRNA:   3'- -UGC-UGCUUG------------UGGGCCu-----------CCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 30901 0.66 0.755973
Target:  5'- cACG-CGGAgACuuCCGGGGccGUCCCCgCGGg -3'
miRNA:   3'- -UGCuGCUUgUG--GGCCUC--CAGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 32294 0.66 0.76504
Target:  5'- cGCGugccagaGAuCACCCc--GGUCCCCCGGc -3'
miRNA:   3'- -UGCug-----CUuGUGGGccuCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 32951 0.71 0.47925
Target:  5'- uUGugGGGC-CCCGGgccggggccccuuGGGUCCgCCGGg -3'
miRNA:   3'- uGCugCUUGuGGGCC-------------UCCAGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 33105 0.67 0.718793
Target:  5'- cCGGCGAGCGggUCCGGAcGGgg-CCCGGa -3'
miRNA:   3'- uGCUGCUUGU--GGGCCU-CCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 34307 0.68 0.652407
Target:  5'- aGCGGCGGggggcgGCGCgCCGGAcggGGcgcuggagauaacggCCCCCGGg -3'
miRNA:   3'- -UGCUGCU------UGUG-GGCCU---CCa--------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 41693 0.66 0.746807
Target:  5'- gGCGGCGugcCGCCCGccGuGUCcuCCCCGGg -3'
miRNA:   3'- -UGCUGCuu-GUGGGCcuC-CAG--GGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 43362 0.69 0.573717
Target:  5'- uCGAUG-ACGCCCuGGGGUCCCUgGa -3'
miRNA:   3'- uGCUGCuUGUGGGcCUCCAGGGGgCc -5'
5709 5' -60.3 NC_001806.1 + 46047 1.1 0.001364
Target:  5'- gACGACGAACACCCGGAGGUCCCCCGGa -3'
miRNA:   3'- -UGCUGCUUGUGGGCCUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 46433 0.67 0.698809
Target:  5'- cGCGGuCGGGCGCCUGGcGG-CCaugcaugCCCGGa -3'
miRNA:   3'- -UGCU-GCUUGUGGGCCuCCaGG-------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 49401 0.66 0.76504
Target:  5'- uGCG-CGGuCGCCUGGAcgaugaugaugaGGUUCCCCGcGg -3'
miRNA:   3'- -UGCuGCUuGUGGGCCU------------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 51024 0.66 0.800161
Target:  5'- aGCGGCGggUccguguuggGCCCGcGGGUCCgCgUGGu -3'
miRNA:   3'- -UGCUGCuuG---------UGGGCcUCCAGG-GgGCC- -5'
5709 5' -60.3 NC_001806.1 + 52036 0.75 0.280028
Target:  5'- uCGGCGGcaGCCCGGAGGcgCCCgCGGa -3'
miRNA:   3'- uGCUGCUugUGGGCCUCCa-GGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 52544 0.7 0.526154
Target:  5'- gACGACGuGguCCgCGGGGccUCCCCCGGa -3'
miRNA:   3'- -UGCUGCuUguGG-GCCUCc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52696 0.66 0.755973
Target:  5'- cCG-CGucCACCCGGAGGU--UCCGGa -3'
miRNA:   3'- uGCuGCuuGUGGGCCUCCAggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 54099 0.71 0.489201
Target:  5'- gGCGGgGAGCcgaGCCCgcaugGGGGGUgUCCCGGg -3'
miRNA:   3'- -UGCUgCUUG---UGGG-----CCUCCAgGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55312 0.71 0.507535
Target:  5'- gGCGcuguCGuACACCaGGA-GUCCCCCGGg -3'
miRNA:   3'- -UGCu---GCuUGUGGgCCUcCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55727 0.66 0.800161
Target:  5'- cUGGCGGcugACCCGGGGGaCCCCgaugUGGg -3'
miRNA:   3'- uGCUGCUug-UGGGCCUCCaGGGG----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.