miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 17146 0.66 0.76504
Target:  5'- -gGACGccuccGCugCCGGucgcuccaAGGgccCCCCCGGg -3'
miRNA:   3'- ugCUGCu----UGugGGCC--------UCCa--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 19107 0.69 0.583363
Target:  5'- cCGACGGgguggGgGCCCGGGGcugcGUUUCCCGGg -3'
miRNA:   3'- uGCUGCU-----UgUGGGCCUC----CAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 19882 0.7 0.567946
Target:  5'- -aGGCGGAC-CgguggguuucugucgUCGGAGG-CCCCCGGg -3'
miRNA:   3'- ugCUGCUUGuG---------------GGCCUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 20394 0.69 0.593042
Target:  5'- cCGGCGGGCGggaCCGGGGGg--CCCGGg -3'
miRNA:   3'- uGCUGCUUGUg--GGCCUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21188 0.71 0.507535
Target:  5'- cGCGACGAGCG---GGGGG-CCCUCGGg -3'
miRNA:   3'- -UGCUGCUUGUgggCCUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21276 0.72 0.4362
Target:  5'- uCGACG-ACGCCCggcgggacgGGAGGgCCCCCGcGg -3'
miRNA:   3'- uGCUGCuUGUGGG---------CCUCCaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 21548 0.66 0.800161
Target:  5'- cGCGGCGcgUAUCCGGA---CCCCaCGGa -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUccaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 21790 0.66 0.800161
Target:  5'- cGCGGCGccGGCAgccCCCGGGcGGacgccgCCCCCGc -3'
miRNA:   3'- -UGCUGC--UUGU---GGGCCU-CCa-----GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 22045 0.72 0.427689
Target:  5'- aGCGGgGAGCcgugGCCCGGcgccGGGcccccgCCCCCGGg -3'
miRNA:   3'- -UGCUgCUUG----UGGGCC----UCCa-----GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 22564 0.69 0.593042
Target:  5'- cUGACGGGgGCCgCGG-GGagCCCCGGc -3'
miRNA:   3'- uGCUGCUUgUGG-GCCuCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 22638 0.66 0.76504
Target:  5'- -gGGCGAGCGCgCGGug--CCCgCCGGg -3'
miRNA:   3'- ugCUGCUUGUGgGCCuccaGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 23310 0.66 0.779322
Target:  5'- cCGGCccGGcCGCCCGGAGGcggcggcccgcgaCCCCCGa -3'
miRNA:   3'- uGCUG--CUuGUGGGCCUCCa------------GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 23772 0.66 0.782846
Target:  5'- gACGACGAuaaccccCACCCccacGGGG-CCgCCGGg -3'
miRNA:   3'- -UGCUGCUu------GUGGGc---CUCCaGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 23940 0.73 0.386662
Target:  5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 24788 0.76 0.259952
Target:  5'- gACGACGAcgGCCCGGGGGcCCugccgccggcgccgCCCGGg -3'
miRNA:   3'- -UGCUGCUugUGGGCCUCCaGG--------------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 26255 0.72 0.419278
Target:  5'- gGCGGCGGGCAgCCCGGGc--CCCCCGcGg -3'
miRNA:   3'- -UGCUGCUUGU-GGGCCUccaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 27816 0.69 0.622208
Target:  5'- aAUGAUauucuuuggGGGCGCCgGGuuGGUCCCCgGGg -3'
miRNA:   3'- -UGCUG---------CUUGUGGgCCu-CCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 28230 0.68 0.680535
Target:  5'- uUGGgGGGCGCCauguuGGGGGaCCCCCGa -3'
miRNA:   3'- uGCUgCUUGUGGg----CCUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 28520 0.67 0.737549
Target:  5'- -aGACGcAGgGCCCGG-GGUCgCCgUGGg -3'
miRNA:   3'- ugCUGC-UUgUGGGCCuCCAG-GGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 29122 0.66 0.791569
Target:  5'- gGCGugGAugGgggggcgguCUCGGGGGggagCCCCCc- -3'
miRNA:   3'- -UGCugCUugU---------GGGCCUCCa---GGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.