miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 369 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 1440 0.69 0.573717
Target:  5'- -gGGCG-GCGCCggCGGcAGGgCCCCCGGg -3'
miRNA:   3'- ugCUGCuUGUGG--GCC-UCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 1683 0.69 0.611497
Target:  5'- cGCGcCGGGCGCCauggcguCGGuGGUCCCCgaGGc -3'
miRNA:   3'- -UGCuGCUUGUGG-------GCCuCCAGGGGg-CC- -5'
5709 5' -60.3 NC_001806.1 + 2286 0.69 0.622208
Target:  5'- uCGGCGGAcCACuCCGGcGGccCCCCCGa -3'
miRNA:   3'- uGCUGCUU-GUG-GGCCuCCa-GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 3094 0.68 0.658243
Target:  5'- gGCGGCGGcgGCCgCGGAgcucggcaggcgcgGGUCCCgCGGc -3'
miRNA:   3'- -UGCUGCUugUGG-GCCU--------------CCAGGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 3311 0.74 0.340252
Target:  5'- gGCGGCGGggaagcgGgGCCCGcGGGUCCCuCCGGc -3'
miRNA:   3'- -UGCUGCU-------UgUGGGCcUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 3556 0.73 0.378774
Target:  5'- cGCGGCGGACAgCCGccccagggcggcGAGGaUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCUUGUgGGC------------CUCC-AGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 3646 0.67 0.725391
Target:  5'- gGCGGCGAcccccucgucaucuGCGCcggcgCCGGGGcUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCU--------------UGUG-----GGCCUCcAGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 4361 0.73 0.394659
Target:  5'- uGCGgcccGCGGAgGCCgCGGGGGUCCucgccgccgCCCGGg -3'
miRNA:   3'- -UGC----UGCUUgUGG-GCCUCCAGG---------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4444 0.77 0.238857
Target:  5'- gGCGGCGucCGCCCGGGGG-CUgCCGGc -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUCCaGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4941 0.66 0.76504
Target:  5'- gGCGuCGGugccCGCCgCGGGGGcccucccgUCCCgCCGGg -3'
miRNA:   3'- -UGCuGCUu---GUGG-GCCUCC--------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 5374 0.67 0.696894
Target:  5'- cGCGGCGAGCGucugacggucugucUCUGGcGGUCCCgcgUCGGg -3'
miRNA:   3'- -UGCUGCUUGU--------------GGGCCuCCAGGG---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 5583 0.7 0.545024
Target:  5'- cCGACGccGGCACgCCGGGGG-CCCgUGGc -3'
miRNA:   3'- uGCUGC--UUGUG-GGCCUCCaGGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 5818 0.66 0.800161
Target:  5'- uACGAgcccCGcGCGCCCGuuGGccgUCCCCGGg -3'
miRNA:   3'- -UGCU----GCuUGUGGGCcuCCa--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 6338 0.69 0.583363
Target:  5'- -gGACGcAC-CCCGGGGG-CCUCCGa -3'
miRNA:   3'- ugCUGCuUGuGGGCCUCCaGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 6792 0.73 0.394659
Target:  5'- gGCGGCcaGAACcgccgugcacgACCCGGAGcGUCCCCUGc -3'
miRNA:   3'- -UGCUG--CUUG-----------UGGGCCUC-CAGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 7379 0.66 0.745885
Target:  5'- cACGAC-AAC-CCCGGucucccaGGGagCCCCGGu -3'
miRNA:   3'- -UGCUGcUUGuGGGCC-------UCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 10404 0.73 0.394659
Target:  5'- -aGGCGGGaGCCgGGGGGUCCCgCUGGc -3'
miRNA:   3'- ugCUGCUUgUGGgCCUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 13647 0.7 0.544075
Target:  5'- cGCGcCGGACcCCCGGAgggucggucagcuGGUCCaggaCCGGa -3'
miRNA:   3'- -UGCuGCUUGuGGGCCU-------------CCAGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 17060 0.67 0.709309
Target:  5'- aACGACGGGC-CCCGG-GGUUUUaaGGa -3'
miRNA:   3'- -UGCUGCUUGuGGGCCuCCAGGGggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.