miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 152079 0.68 0.680535
Target:  5'- cGCGcGCGcGCGCCCGcGGGGgg-CCCGGg -3'
miRNA:   3'- -UGC-UGCuUGUGGGC-CUCCaggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 149691 0.67 0.736619
Target:  5'- cAUGGCGGccguuccaguguaAgGgUCGGGGGUCCCCCa- -3'
miRNA:   3'- -UGCUGCU-------------UgUgGGCCUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 149651 0.67 0.728208
Target:  5'- cAUGGCGcccGGCuCCCguguaugaguGGGGGUCCCCCa- -3'
miRNA:   3'- -UGCUGC---UUGuGGG----------CCUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 144928 0.67 0.709309
Target:  5'- -aGAUGAACACUCGGGguuaccgccaacGGccggCCCCCGu -3'
miRNA:   3'- ugCUGCUUGUGGGCCU------------CCa---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 144873 0.67 0.68921
Target:  5'- cGCGACGcgaaaaaGGCccCCCGGAGGcUUUUCCGGg -3'
miRNA:   3'- -UGCUGC-------UUGu-GGGCCUCC-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 143942 0.66 0.777553
Target:  5'- uCGACGAGCACCCccgcccacgCCCCCGc -3'
miRNA:   3'- uGCUGCUUGUGGGccucca---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 140027 0.73 0.363323
Target:  5'- cGCGGCGAaaGCGCCCGGAGcG-CCacggCCGGc -3'
miRNA:   3'- -UGCUGCU--UGUGGGCCUC-CaGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 136819 0.68 0.670861
Target:  5'- gACGACGuuguACACCCccuGG-CCCUCGGu -3'
miRNA:   3'- -UGCUGCu---UGUGGGccuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 136617 0.7 0.564108
Target:  5'- cACGuguCGAACACCCGcucGGcCaCCCCGGc -3'
miRNA:   3'- -UGCu--GCUUGUGGGCcu-CCaG-GGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 131471 0.68 0.631952
Target:  5'- gGCGGCgcuguugccgGAACGCaCCGaGGGGccaaguuggCCCCCGGa -3'
miRNA:   3'- -UGCUG----------CUUGUG-GGC-CUCCa--------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 127268 0.74 0.348316
Target:  5'- cCGGCGGACcCCCGGAGGcgccUgCCCCGc -3'
miRNA:   3'- uGCUGCUUGuGGGCCUCC----AgGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 126614 0.69 0.619286
Target:  5'- aGCGGCGuuguCUCGGAGGUgcuucuguuuggcgCCCCCGa -3'
miRNA:   3'- -UGCUGCuuguGGGCCUCCA--------------GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 126473 0.68 0.641697
Target:  5'- aGCGuGCGAuacuucGCGCCCGGGcGcGUCCccggCCCGGa -3'
miRNA:   3'- -UGC-UGCU------UGUGGGCCU-C-CAGG----GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 125829 0.69 0.593042
Target:  5'- uAUGGCGccuGACGCgCCGcGGG-CCCCCGGc -3'
miRNA:   3'- -UGCUGC---UUGUG-GGCcUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 121285 0.7 0.564108
Target:  5'- cACGcauACGGGCGgccaccccCCCGGAGGaaaCCCCCGa -3'
miRNA:   3'- -UGC---UGCUUGU--------GGGCCUCCa--GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 120863 0.72 0.410968
Target:  5'- cCGGCGGcC-CCUGGcgccgccuGGUCCCCCGGg -3'
miRNA:   3'- uGCUGCUuGuGGGCCu-------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 114140 0.67 0.737549
Target:  5'- aAC-AUGGugGuCCCGGAGaucgCCCCCGGc -3'
miRNA:   3'- -UGcUGCUugU-GGGCCUCca--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 113283 0.87 0.052651
Target:  5'- gACGugGAGCugCCGGGGGgggacguUCCCCCGGc -3'
miRNA:   3'- -UGCugCUUGugGGCCUCC-------AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 110086 0.7 0.554541
Target:  5'- gGCGACGuAACacgGCCCaGAGG-CCCCCu- -3'
miRNA:   3'- -UGCUGC-UUG---UGGGcCUCCaGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 109070 0.73 0.378774
Target:  5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3'
miRNA:   3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.