Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5709 | 5' | -60.3 | NC_001806.1 | + | 51024 | 0.66 | 0.800161 |
Target: 5'- aGCGGCGggUccguguuggGCCCGcGGGUCCgCgUGGu -3' miRNA: 3'- -UGCUGCuuG---------UGGGCcUCCAGG-GgGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 103478 | 0.73 | 0.374092 |
Target: 5'- gGCGugGGAaaACCCGGGGGcuguugucggguggcUCCCgCCGGa -3' miRNA: 3'- -UGCugCUUg-UGGGCCUCC---------------AGGG-GGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 3556 | 0.73 | 0.378774 |
Target: 5'- cGCGGCGGACAgCCGccccagggcggcGAGGaUCCCCgCGGc -3' miRNA: 3'- -UGCUGCUUGUgGGC------------CUCC-AGGGG-GCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 109070 | 0.73 | 0.378774 |
Target: 5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3' miRNA: 3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 23940 | 0.73 | 0.386662 |
Target: 5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3' miRNA: 3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 108710 | 0.73 | 0.386662 |
Target: 5'- cGCGACGu--GCUCGGGGGagaucaccCCCCCGGg -3' miRNA: 3'- -UGCUGCuugUGGGCCUCCa-------GGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 10404 | 0.73 | 0.394659 |
Target: 5'- -aGGCGGGaGCCgGGGGGUCCCgCUGGc -3' miRNA: 3'- ugCUGCUUgUGGgCCUCCAGGG-GGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 4361 | 0.73 | 0.394659 |
Target: 5'- uGCGgcccGCGGAgGCCgCGGGGGUCCucgccgccgCCCGGg -3' miRNA: 3'- -UGC----UGCUUgUGG-GCCUCCAGG---------GGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 6792 | 0.73 | 0.394659 |
Target: 5'- gGCGGCcaGAACcgccgugcacgACCCGGAGcGUCCCCUGc -3' miRNA: 3'- -UGCUG--CUUG-----------UGGGCCUC-CAGGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 140027 | 0.73 | 0.363323 |
Target: 5'- cGCGGCGAaaGCGCCCGGAGcG-CCacggCCGGc -3' miRNA: 3'- -UGCUGCU--UGUGGGCCUC-CaGGg---GGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 127268 | 0.74 | 0.348316 |
Target: 5'- cCGGCGGACcCCCGGAGGcgccUgCCCCGc -3' miRNA: 3'- uGCUGCUUGuGGGCCUCC----AgGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 3311 | 0.74 | 0.340252 |
Target: 5'- gGCGGCGGggaagcgGgGCCCGcGGGUCCCuCCGGc -3' miRNA: 3'- -UGCUGCU-------UgUGGGCcUCCAGGG-GGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 113283 | 0.87 | 0.052651 |
Target: 5'- gACGugGAGCugCCGGGGGgggacguUCCCCCGGc -3' miRNA: 3'- -UGCugCUUGugGGCCUCC-------AGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 102325 | 0.8 | 0.148434 |
Target: 5'- aACGugGGuacucGCGuCCCGGGGGacgUCCCCCGGg -3' miRNA: 3'- -UGCugCU-----UGU-GGGCCUCC---AGGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 91457 | 0.77 | 0.21768 |
Target: 5'- cCGGCGAGCACCUGGccaugcuguguGGGUuuUCCCCGGc -3' miRNA: 3'- uGCUGCUUGUGGGCC-----------UCCA--GGGGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 102945 | 0.77 | 0.238857 |
Target: 5'- cGCGACGGccAgACCCGGGGGcgccCCCCCGu -3' miRNA: 3'- -UGCUGCU--UgUGGGCCUCCa---GGGGGCc -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 4444 | 0.77 | 0.238857 |
Target: 5'- gGCGGCGucCGCCCGGGGG-CUgCCGGc -3' miRNA: 3'- -UGCUGCuuGUGGGCCUCCaGGgGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 24788 | 0.76 | 0.259952 |
Target: 5'- gACGACGAcgGCCCGGGGGcCCugccgccggcgccgCCCGGg -3' miRNA: 3'- -UGCUGCUugUGGGCCUCCaGG--------------GGGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 52036 | 0.75 | 0.280028 |
Target: 5'- uCGGCGGcaGCCCGGAGGcgCCCgCGGa -3' miRNA: 3'- uGCUGCUugUGGGCCUCCa-GGGgGCC- -5' |
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5709 | 5' | -60.3 | NC_001806.1 | + | 93574 | 0.75 | 0.28635 |
Target: 5'- cGCGACGccguucGGCgGCCCGGGGG-CCCCgGGa -3' miRNA: 3'- -UGCUGC------UUG-UGGGCCUCCaGGGGgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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