miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 46047 1.1 0.001364
Target:  5'- gACGACGAACACCCGGAGGUCCCCCGGa -3'
miRNA:   3'- -UGCUGCUUGUGGGCCUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 113283 0.87 0.052651
Target:  5'- gACGugGAGCugCCGGGGGgggacguUCCCCCGGc -3'
miRNA:   3'- -UGCugCUUGugGGCCUCC-------AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102325 0.8 0.148434
Target:  5'- aACGugGGuacucGCGuCCCGGGGGacgUCCCCCGGg -3'
miRNA:   3'- -UGCugCU-----UGU-GGGCCUCC---AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 91457 0.77 0.21768
Target:  5'- cCGGCGAGCACCUGGccaugcuguguGGGUuuUCCCCGGc -3'
miRNA:   3'- uGCUGCUUGUGGGCC-----------UCCA--GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4444 0.77 0.238857
Target:  5'- gGCGGCGucCGCCCGGGGG-CUgCCGGc -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUCCaGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 102945 0.77 0.238857
Target:  5'- cGCGACGGccAgACCCGGGGGcgccCCCCCGu -3'
miRNA:   3'- -UGCUGCU--UgUGGGCCUCCa---GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 24788 0.76 0.259952
Target:  5'- gACGACGAcgGCCCGGGGGcCCugccgccggcgccgCCCGGg -3'
miRNA:   3'- -UGCUGCUugUGGGCCUCCaGG--------------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52036 0.75 0.280028
Target:  5'- uCGGCGGcaGCCCGGAGGcgCCCgCGGa -3'
miRNA:   3'- uGCUGCUugUGGGCCUCCa-GGGgGCC- -5'
5709 5' -60.3 NC_001806.1 + 93574 0.75 0.28635
Target:  5'- cGCGACGccguucGGCgGCCCGGGGG-CCCCgGGa -3'
miRNA:   3'- -UGCUGC------UUG-UGGGCCUCCaGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 3311 0.74 0.340252
Target:  5'- gGCGGCGGggaagcgGgGCCCGcGGGUCCCuCCGGc -3'
miRNA:   3'- -UGCUGCU-------UgUGGGCcUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 127268 0.74 0.348316
Target:  5'- cCGGCGGACcCCCGGAGGcgccUgCCCCGc -3'
miRNA:   3'- uGCUGCUUGuGGGCCUCC----AgGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 140027 0.73 0.363323
Target:  5'- cGCGGCGAaaGCGCCCGGAGcG-CCacggCCGGc -3'
miRNA:   3'- -UGCUGCU--UGUGGGCCUC-CaGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 103478 0.73 0.374092
Target:  5'- gGCGugGGAaaACCCGGGGGcuguugucggguggcUCCCgCCGGa -3'
miRNA:   3'- -UGCugCUUg-UGGGCCUCC---------------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 3556 0.73 0.378774
Target:  5'- cGCGGCGGACAgCCGccccagggcggcGAGGaUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCUUGUgGGC------------CUCC-AGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 109070 0.73 0.378774
Target:  5'- cCGAUaAACGCCCGcGGGGcCCCCgCGGa -3'
miRNA:   3'- uGCUGcUUGUGGGC-CUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 108710 0.73 0.386662
Target:  5'- cGCGACGu--GCUCGGGGGagaucaccCCCCCGGg -3'
miRNA:   3'- -UGCUGCuugUGGGCCUCCa-------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 23940 0.73 0.386662
Target:  5'- gGCGGCGGG-GCCUGGGGGggCCgCCGGa -3'
miRNA:   3'- -UGCUGCUUgUGGGCCUCCa-GGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4361 0.73 0.394659
Target:  5'- uGCGgcccGCGGAgGCCgCGGGGGUCCucgccgccgCCCGGg -3'
miRNA:   3'- -UGC----UGCUUgUGG-GCCUCCAGG---------GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 6792 0.73 0.394659
Target:  5'- gGCGGCcaGAACcgccgugcacgACCCGGAGcGUCCCCUGc -3'
miRNA:   3'- -UGCUG--CUUG-----------UGGGCCUC-CAGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 79543 0.73 0.394659
Target:  5'- cGCGGCcGGCGCCCGuGGG-CCCCCGc -3'
miRNA:   3'- -UGCUGcUUGUGGGCcUCCaGGGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.