miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 10404 0.73 0.394659
Target:  5'- -aGGCGGGaGCCgGGGGGUCCCgCUGGc -3'
miRNA:   3'- ugCUGCUUgUGGgCCUCCAGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 106679 0.73 0.402761
Target:  5'- -gGACGAAaacccCCCGGGGGcucuucccgggCCCCCGGg -3'
miRNA:   3'- ugCUGCUUgu---GGGCCUCCa----------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 120863 0.72 0.410968
Target:  5'- cCGGCGGcC-CCUGGcgccgccuGGUCCCCCGGg -3'
miRNA:   3'- uGCUGCUuGuGGGCCu-------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 26255 0.72 0.419278
Target:  5'- gGCGGCGGGCAgCCCGGGc--CCCCCGcGg -3'
miRNA:   3'- -UGCUGCUUGU-GGGCCUccaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 22045 0.72 0.427689
Target:  5'- aGCGGgGAGCcgugGCCCGGcgccGGGcccccgCCCCCGGg -3'
miRNA:   3'- -UGCUgCUUG----UGGGCC----UCCa-----GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21276 0.72 0.4362
Target:  5'- uCGACG-ACGCCCggcgggacgGGAGGgCCCCCGcGg -3'
miRNA:   3'- uGCUGCuUGUGGG---------CCUCCaGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 77520 0.72 0.4362
Target:  5'- uGCGagugaGCGGAgGCCCGG-GG-CCCCUGGu -3'
miRNA:   3'- -UGC-----UGCUUgUGGGCCuCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 32951 0.71 0.47925
Target:  5'- uUGugGGGC-CCCGGgccggggccccuuGGGUCCgCCGGg -3'
miRNA:   3'- uGCugCUUGuGGGCC-------------UCCAGGgGGCC- -5'
5709 5' -60.3 NC_001806.1 + 93638 0.71 0.480151
Target:  5'- cACGGgGAugACCCguuuggGGAGGggcCCCCCGa -3'
miRNA:   3'- -UGCUgCUugUGGG------CCUCCa--GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 88178 0.71 0.489201
Target:  5'- -aGACaGGAUAUCUGGAugaccaGGUCCUCCGGg -3'
miRNA:   3'- ugCUG-CUUGUGGGCCU------CCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 54099 0.71 0.489201
Target:  5'- gGCGGgGAGCcgaGCCCgcaugGGGGGUgUCCCGGg -3'
miRNA:   3'- -UGCUgCUUG---UGGG-----CCUCCAgGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55312 0.71 0.507535
Target:  5'- gGCGcuguCGuACACCaGGA-GUCCCCCGGg -3'
miRNA:   3'- -UGCu---GCuUGUGGgCCUcCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21188 0.71 0.507535
Target:  5'- cGCGACGAGCG---GGGGG-CCCUCGGg -3'
miRNA:   3'- -UGCUGCUUGUgggCCUCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 56701 0.71 0.507535
Target:  5'- cCGG-GAAC-CCCGGgucgcucuGGGUCCUCCGGg -3'
miRNA:   3'- uGCUgCUUGuGGGCC--------UCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 80251 0.7 0.51588
Target:  5'- -gGGCGGuguuGCGCCCGGAGGcccgguuUCCCgCCGc -3'
miRNA:   3'- ugCUGCU----UGUGGGCCUCC-------AGGG-GGCc -5'
5709 5' -60.3 NC_001806.1 + 102047 0.7 0.526154
Target:  5'- uUGAUGGcccccgagucGgACCCGGAGG-CCCCaCGGg -3'
miRNA:   3'- uGCUGCU----------UgUGGGCCUCCaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 64954 0.7 0.526154
Target:  5'- cCGGCGucGGCGCCCGGgccGGGggUCCCGGg -3'
miRNA:   3'- uGCUGC--UUGUGGGCC---UCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52544 0.7 0.526154
Target:  5'- gACGACGuGguCCgCGGGGccUCCCCCGGa -3'
miRNA:   3'- -UGCUGCuUguGG-GCCUCc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 13647 0.7 0.544075
Target:  5'- cGCGcCGGACcCCCGGAgggucggucagcuGGUCCaggaCCGGa -3'
miRNA:   3'- -UGCuGCUUGuGGGCCU-------------CCAGGg---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 5583 0.7 0.545024
Target:  5'- cCGACGccGGCACgCCGGGGG-CCCgUGGc -3'
miRNA:   3'- uGCUGC--UUGUG-GGCCUCCaGGGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.