miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 94178 0.66 0.755973
Target:  5'- uGCGGCGucgucugaGGCcggGCCUGGAGG-CCCaggCCGGg -3'
miRNA:   3'- -UGCUGC--------UUG---UGGGCCUCCaGGG---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 41693 0.66 0.746807
Target:  5'- gGCGGCGugcCGCCCGccGuGUCcuCCCCGGg -3'
miRNA:   3'- -UGCUGCuu-GUGGGCcuC-CAG--GGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52696 0.66 0.755973
Target:  5'- cCG-CGucCACCCGGAGGU--UCCGGa -3'
miRNA:   3'- uGCuGCuuGUGGGCCUCCAggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 55786 0.66 0.78635
Target:  5'- cGCGGUGAucguGgGCCCGGuGGaggcaguuuccgagCCCCCGGa -3'
miRNA:   3'- -UGCUGCU----UgUGGGCCuCCa-------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21548 0.66 0.800161
Target:  5'- cGCGGCGcgUAUCCGGA---CCCCaCGGa -3'
miRNA:   3'- -UGCUGCuuGUGGGCCUccaGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 56093 0.66 0.790702
Target:  5'- uAUGGCGAaaucaucACACaCCGGcGGUCUUCgGGa -3'
miRNA:   3'- -UGCUGCU-------UGUG-GGCCuCCAGGGGgCC- -5'
5709 5' -60.3 NC_001806.1 + 29122 0.66 0.791569
Target:  5'- gGCGugGAugGgggggcgguCUCGGGGGggagCCCCCc- -3'
miRNA:   3'- -UGCugCUugU---------GGGCCUCCa---GGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 57984 0.66 0.791569
Target:  5'- -gGGC-AGCGCCaucGAGGUCUUCCGGa -3'
miRNA:   3'- ugCUGcUUGUGGgc-CUCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 49401 0.66 0.76504
Target:  5'- uGCG-CGGuCGCCUGGAcgaugaugaugaGGUUCCCCGcGg -3'
miRNA:   3'- -UGCuGCUuGUGGGCCU------------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 67885 0.66 0.791569
Target:  5'- ---cCGcACAUCCGGAcaaUCCCCCGGg -3'
miRNA:   3'- ugcuGCuUGUGGGCCUcc-AGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 32294 0.66 0.76504
Target:  5'- cGCGugccagaGAuCACCCc--GGUCCCCCGGc -3'
miRNA:   3'- -UGCug-----CUuGUGGGccuCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 30244 0.66 0.763235
Target:  5'- uGCGuGCGAGCgccgccuccgggGCCCGGcccccgcgccccGG-CCCCCGGg -3'
miRNA:   3'- -UGC-UGCUUG------------UGGGCCu-----------CCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 71071 0.66 0.756885
Target:  5'- cGCGACcuaGGgGCCUGGGGGgacuacagccucggcCCCCUGGg -3'
miRNA:   3'- -UGCUGc--UUgUGGGCCUCCa--------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4941 0.66 0.76504
Target:  5'- gGCGuCGGugccCGCCgCGGGGGcccucccgUCCCgCCGGg -3'
miRNA:   3'- -UGCuGCUu---GUGG-GCCUCC--------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 7379 0.66 0.745885
Target:  5'- cACGAC-AAC-CCCGGucucccaGGGagCCCCGGu -3'
miRNA:   3'- -UGCUGcUUGuGGGCC-------UCCagGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 73756 0.66 0.774001
Target:  5'- uCGGCGAguggcuucuggaGCGCUCGcAGGcCCaCCCGGa -3'
miRNA:   3'- uGCUGCU------------UGUGGGCcUCCaGG-GGGCC- -5'
5709 5' -60.3 NC_001806.1 + 21790 0.66 0.800161
Target:  5'- cGCGGCGccGGCAgccCCCGGGcGGacgccgCCCCCGc -3'
miRNA:   3'- -UGCUGC--UUGU---GGGCCU-CCa-----GGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 3646 0.67 0.725391
Target:  5'- gGCGGCGAcccccucgucaucuGCGCcggcgCCGGGGcUCCCCgCGGc -3'
miRNA:   3'- -UGCUGCU--------------UGUG-----GGCCUCcAGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 149651 0.67 0.728208
Target:  5'- cAUGGCGcccGGCuCCCguguaugaguGGGGGUCCCCCa- -3'
miRNA:   3'- -UGCUGC---UUGuGGG----------CCUCCAGGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 69416 0.67 0.737549
Target:  5'- gGCGGCGGGCGucCCCGcGcGGacgCCCaCCGGc -3'
miRNA:   3'- -UGCUGCUUGU--GGGC-CuCCa--GGG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.