miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5709 5' -60.3 NC_001806.1 + 95903 0.66 0.774001
Target:  5'- aACGugGGgcuccugccGCACCUgaaGGAGGagcUCgCCCGGu -3'
miRNA:   3'- -UGCugCU---------UGUGGG---CCUCC---AGgGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 41693 0.66 0.746807
Target:  5'- gGCGGCGugcCGCCCGccGuGUCcuCCCCGGg -3'
miRNA:   3'- -UGCUGCuu-GUGGGCcuC-CAG--GGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 52696 0.66 0.755973
Target:  5'- cCG-CGucCACCCGGAGGU--UCCGGa -3'
miRNA:   3'- uGCuGCuuGUGGGCCUCCAggGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 76892 0.66 0.76504
Target:  5'- cGCGuCGAG-GCCCugcGGAGGUCUCUCGa -3'
miRNA:   3'- -UGCuGCUUgUGGG---CCUCCAGGGGGCc -5'
5709 5' -60.3 NC_001806.1 + 32294 0.66 0.76504
Target:  5'- cGCGugccagaGAuCACCCc--GGUCCCCCGGc -3'
miRNA:   3'- -UGCug-----CUuGUGGGccuCCAGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 57011 0.66 0.77311
Target:  5'- gGCGGCGcccagugccaGGCacuggguggccggGCCCGGggccGGGgCCCCCGGc -3'
miRNA:   3'- -UGCUGC----------UUG-------------UGGGCC----UCCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 4941 0.66 0.76504
Target:  5'- gGCGuCGGugccCGCCgCGGGGGcccucccgUCCCgCCGGg -3'
miRNA:   3'- -UGCuGCUu---GUGG-GCCUCC--------AGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 30244 0.66 0.763235
Target:  5'- uGCGuGCGAGCgccgccuccgggGCCCGGcccccgcgccccGG-CCCCCGGg -3'
miRNA:   3'- -UGC-UGCUUG------------UGGGCCu-----------CCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 30901 0.66 0.755973
Target:  5'- cACG-CGGAgACuuCCGGGGccGUCCCCgCGGg -3'
miRNA:   3'- -UGCuGCUUgUG--GGCCUC--CAGGGG-GCC- -5'
5709 5' -60.3 NC_001806.1 + 94178 0.66 0.755973
Target:  5'- uGCGGCGucgucugaGGCcggGCCUGGAGG-CCCaggCCGGg -3'
miRNA:   3'- -UGCUGC--------UUG---UGGGCCUCCaGGG---GGCC- -5'
5709 5' -60.3 NC_001806.1 + 29957 0.66 0.76504
Target:  5'- cGCGAgcCGcGGCGCCgCGGGGGgcgucuggccCCUCCGGg -3'
miRNA:   3'- -UGCU--GC-UUGUGG-GCCUCCa---------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 49401 0.66 0.76504
Target:  5'- uGCG-CGGuCGCCUGGAcgaugaugaugaGGUUCCCCGcGg -3'
miRNA:   3'- -UGCuGCUuGUGGGCCU------------CCAGGGGGC-C- -5'
5709 5' -60.3 NC_001806.1 + 51024 0.66 0.800161
Target:  5'- aGCGGCGggUccguguuggGCCCGcGGGUCCgCgUGGu -3'
miRNA:   3'- -UGCUGCuuG---------UGGGCcUCCAGG-GgGCC- -5'
5709 5' -60.3 NC_001806.1 + 78993 0.66 0.774001
Target:  5'- uUGugGGAaaACCCGGAcc-CCCCCGGc -3'
miRNA:   3'- uGCugCUUg-UGGGCCUccaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 60567 0.66 0.755973
Target:  5'- gACGACGAGgACCUcccccuGGaUCCCCGGg -3'
miRNA:   3'- -UGCUGCUUgUGGGccu---CCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 22638 0.66 0.76504
Target:  5'- -gGGCGAGCGCgCGGug--CCCgCCGGg -3'
miRNA:   3'- ugCUGCUUGUGgGCCuccaGGG-GGCC- -5'
5709 5' -60.3 NC_001806.1 + 76209 0.66 0.746807
Target:  5'- uACGugGAuauccgcgauCGCCUGGAcGcCCUCCGGg -3'
miRNA:   3'- -UGCugCUu---------GUGGGCCUcCaGGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 29161 0.66 0.774001
Target:  5'- cGCGAgGAAgACCCcggcaguugcGGGGGcgCCCCCc- -3'
miRNA:   3'- -UGCUgCUUgUGGG----------CCUCCa-GGGGGcc -5'
5709 5' -60.3 NC_001806.1 + 71071 0.66 0.756885
Target:  5'- cGCGACcuaGGgGCCUGGGGGgacuacagccucggcCCCCUGGg -3'
miRNA:   3'- -UGCUGc--UUgUGGGCCUCCa--------------GGGGGCC- -5'
5709 5' -60.3 NC_001806.1 + 17146 0.66 0.76504
Target:  5'- -gGACGccuccGCugCCGGucgcuccaAGGgccCCCCCGGg -3'
miRNA:   3'- ugCUGCu----UGugGGCC--------UCCa--GGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.